View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1803_high_8 (Length: 375)
Name: NF1803_high_8
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1803_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 135 - 362
Target Start/End: Original strand, 43526769 - 43526985
Alignment:
| Q |
135 |
agaaggatattgatgtggaggcagcagcgaaggacgacgttgaagaatcatatccatttgttccttctgcctcctcctccattggagaacccaaaattga |
234 |
Q |
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| T |
43526769 |
agaaagatattgatgtggaggcagcagcgaaggacgacgttgaagaatcatatccatttgtcccttctgcctcctcctccattggagaacccaaaattga |
43526868 |
T |
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| Q |
235 |
cataaacaggatcaaaccacagtggaagcgcaagtaagtaatgtcatgtctatctatctatttagttattaacaatcatttttctttcatttcttcttaa |
334 |
Q |
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| T |
43526869 |
cataaacaggatcaaaccacagtggaagcgcaagtaagtaatgtcatatctatctatctatttagttattaacaa-----------tcatttcttcttaa |
43526957 |
T |
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| Q |
335 |
ttacttaatcatatatattttcacaggt |
362 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
43526958 |
ttacttaatcatatatattttcacaggt |
43526985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 43526647 - 43526696
Alignment:
| Q |
18 |
atactaactaaaatggactacaggaaaatcaaagaccaggtaggtcagtg |
67 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43526647 |
atactaactaaaatggactacaggaaaatcaaagaccaggtaggtcagtg |
43526696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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