View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1803_low_1 (Length: 957)
Name: NF1803_low_1
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1803_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 397 - 749
Target Start/End: Original strand, 38814350 - 38814702
Alignment:
| Q |
397 |
gcagatatccatgagatatcaaaagggaattagcgttgaaatgctctcaatactttctagtgaattatagatcagcttgatattctcttttgtgcaagct |
496 |
Q |
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| T |
38814350 |
gcagatatccatgagatatcaaaagggaattagcgttgaaatgctctcaatactttctagtgaattatagatcagcttgatattctcttttgtgcaagct |
38814449 |
T |
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| Q |
497 |
catttcctcatcaacttatcatcactaactcaacatgctaagtagtaacggtattaaactaaatgaacatatacagatcatacaagaatccatttcagtg |
596 |
Q |
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| T |
38814450 |
catttcctcatcaacttatcatcactaactcaacatgctaagtagtaacggtattaaactaaatgaacatatacagatcatacaagaatgcatttcagtg |
38814549 |
T |
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| Q |
597 |
attgaaaactagttaaaagttgatgaaaataggagcatacacttcttcaggctctcgaacatcaattaactgtgcctccttcgagaagttgggatcttga |
696 |
Q |
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| T |
38814550 |
attgaaaactagttaaaagttgatgaaaataggagcatacacttcttcaggctctcgaacatcaatcaactgtgcctcctccaagaaattgggatcttga |
38814649 |
T |
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| Q |
697 |
agtttcacatgcagctcatcaggttgaatgtcttgaaatacagattcttccct |
749 |
Q |
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| T |
38814650 |
aatttcacatgcagctcatcaggttgaatgtctagaagtactggttcttccct |
38814702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 621 - 957
Target Start/End: Original strand, 38821032 - 38821368
Alignment:
| Q |
621 |
gaaaataggagcatacacttcttcaggctctcgaacatcaattaactgtgcctccttcgagaagttgggatcttgaagtttcacatgcagctcatcaggt |
720 |
Q |
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| T |
38821032 |
gaaaataggagcatacacttcttcaggctctcgaacatcaattaactgtgcctccttcgagaagttgggatcttgaagtttcacatgcagctcatcaggt |
38821131 |
T |
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| Q |
721 |
tgaatgtcttgaaatacagattcttccctaatagttaaaggaaaagatttacgacgcataagaagttaagaacactcactgaaataaacaactactgctg |
820 |
Q |
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| T |
38821132 |
tgaatgtcttgaaatacagattcttccctaatagttaaaggaaaagatttacgacacataagaagttaagaacactcactgaaataaacaacaactactg |
38821231 |
T |
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| Q |
821 |
ctaccaagccttatcgcacaaaggtggtgttggctaattagatcaaacaatcaataaggattttcgacaataaccaaatattcaataaatttcccatccg |
920 |
Q |
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| T |
38821232 |
ctaccaagccttatcgcacaaaggtggtgttggctaattagatcaaacaatcaataaggatttacgaaaataaccaaatattcaataaatttcccatccg |
38821331 |
T |
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| Q |
921 |
aacaaaacacattttaccatcaaaattggtgaaaaaa |
957 |
Q |
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| T |
38821332 |
aaagaaacacattttaccatccaacttggagaaaaaa |
38821368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 39 - 281
Target Start/End: Original strand, 38813993 - 38814235
Alignment:
| Q |
39 |
gcagctaattcagcttcaatattgaaaatcaaaataaagatgaatgaactgaaacatcaaaaaacaaaggcttctaactattcaaacttagactgctaaa |
138 |
Q |
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| T |
38813993 |
gcagctaattcagcttcaatattgaaaatcaaaataaagatgaatgaactgaaacatcaaaaaacaaaggcttctaactattcaaacttggactgctaaa |
38814092 |
T |
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| Q |
139 |
gttgtgcttaccagaacatatgtatccttttgaagatcaaatttcgaatttatttcaggcccccaggttccaaattgtcgaaggggaagaactgtaaatc |
238 |
Q |
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| T |
38814093 |
gttgtgcttaccagaacatatgtatccttttgaagatcaaatttcgaatttatttcaggcccccaggttccaaattgtcgaaggggaagaactgtaaatc |
38814192 |
T |
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| Q |
239 |
ctggcaaagatgcggtggtcctgtgtatgatgcgagaatcatt |
281 |
Q |
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| T |
38814193 |
ctggcaaagatgcggtggtcctgtgtatgatgcgagaatcatt |
38814235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 118 - 281
Target Start/End: Original strand, 38820573 - 38820736
Alignment:
| Q |
118 |
attcaaacttagactgctaaagttgtgcttaccagaacatatgtatccttttgaagatcaaatttcgaatttatttcaggcccccaggttccaaattgtc |
217 |
Q |
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| T |
38820573 |
attcaaacttggactgctaaagctgtacttacaagaacatatgtattcttttgaagatccaatttggtgtttatttcaggcacccaggttccaaattgaa |
38820672 |
T |
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| Q |
218 |
gaaggggaagaactgtaaatcctggcaaagatgcggtggtcctgtgtatgatgcgagaatcatt |
281 |
Q |
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| T |
38820673 |
ggaggggaagaaccataaatcctggcaaagacgctttgtccctgtgtataatgagagtatcatt |
38820736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 462 - 522
Target Start/End: Original strand, 38820887 - 38820949
Alignment:
| Q |
462 |
tatagatcagcttgatattctct--tttgtgcaagctcatttcctcatcaacttatcatcact |
522 |
Q |
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| T |
38820887 |
tatagatcagcttgatattgtctattttgtgcaagctcttatcctcatcaacttatcaccact |
38820949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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