View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1803_low_10 (Length: 388)
Name: NF1803_low_10
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1803_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 20 - 380
Target Start/End: Original strand, 32560497 - 32560857
Alignment:
| Q |
20 |
tcaatttgataaatttaatgaactgtgcagtggttttgttcaattgggtcgttactctgatctcttgaacagaacacaagtggttgaattgcagaaagga |
119 |
Q |
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| T |
32560497 |
tcaatttgataaatttaatgaactgtgtagtggttttgttcaattgggtcgttactctgatctcttgaacagaacacaagtggttgaattgcagaaagga |
32560596 |
T |
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| Q |
120 |
agtggtagaaagtggacagttcaaagggatttggatcagttgagacagtataaaaatggttcttttgatgatatcgaggtgattaagattgatgggaaaa |
219 |
Q |
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| T |
32560597 |
agtggtagaaagtggacagttcaaagggatttggatcagttgagacagtataaaaatggttcttttgatgatattgaggtgattaagattgatgggaaaa |
32560696 |
T |
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| Q |
220 |
accctttcttgtggcatgatcattggcctgttaaggactatgcaaaggtttttgagtgcttagtcctggttgatgaatttactcaagaagctgatagagt |
319 |
Q |
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| T |
32560697 |
accctttcttgtggcatgatcattggcctgttaaggactatgcaaaggtttttgagtgcttagtcctggttgatgaatttactcaagaagctgatagagt |
32560796 |
T |
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| Q |
320 |
tgcctctatgattagaaaagttggtagccatgatgataaaggtaattcatttcagaattat |
380 |
Q |
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| T |
32560797 |
tgcctctatgattagaaaagttggtagccatgatgataaaggtaattcatttcagaattat |
32560857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 10751111 - 10751178
Alignment:
| Q |
213 |
gggaaaaaccctttcttgtggcatgatcattggcctgttaaggactatgcaaaggtttttgagtgctt |
280 |
Q |
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| T |
10751111 |
gggaaaaaccctttcttatggcatgatcattggcctttgaaaaactatggaaaggtttttgagtgctt |
10751178 |
T |
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