View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1803_low_12 (Length: 362)
Name: NF1803_low_12
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1803_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 37840682 - 37841010
Alignment:
| Q |
18 |
tcattcatacaccctataactttgtggtctctttccttgtaatttcctttatcagaagtttcacagaaattctaagagtttaccatccaatttccttgtc |
117 |
Q |
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| T |
37840682 |
tcattcataaaccctataactttgtggtctctttccttgtaatttcctttatcagaagtttcacagaaattctaagagtttaccatccaatttccttgtc |
37840781 |
T |
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| Q |
118 |
attccttcaagatagcttagtttcaaagtaagcacctcaaagaacaaaacaatctcaatcatcagctctaaaatatttgtgacctgacaaggtaagttct |
217 |
Q |
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| T |
37840782 |
attccttcaagatagcttagtttcaaagtaagcacctcaaagaacaaaacaatctcaatcatcagctctaaaatatttgtgacctgacaaggtaagttct |
37840881 |
T |
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| Q |
218 |
tcttattatgctgcaaccttgtctaaatgactagaatttgttgtagtagtagaattatcaaactcttgttgattgtttccttcttgcatggtggttttgc |
317 |
Q |
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| T |
37840882 |
tcttattatgctgcaaccttgtctaaatgactagaatttgttgtagtagtagaattatcaaactcttgttgattgtttccttcttgcatggtggttttgc |
37840981 |
T |
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| Q |
318 |
tcttaccactgatgggttgactctgttgt |
346 |
Q |
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| T |
37840982 |
acttaccactgatgggttgactctgttgt |
37841010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 136 - 339
Target Start/End: Original strand, 37821225 - 37821438
Alignment:
| Q |
136 |
agtttcaaagtaagcacctcaaagaacaaaacaatctca---atcatcagctctaaaatatttgtg----acctgacaaggtaagttcttcttattatgc |
228 |
Q |
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| T |
37821225 |
agtttcaaagaagacacctcaaagaacaaaaaaatctcattcatcatcagctccaaaatctttccctcaaacttgacaaggtaagtgcttcttattctgt |
37821324 |
T |
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| Q |
229 |
tgcaaccttgtctaaatgactagaatttgttgtagtagtagaattatcaaactcttgtt---gattgtttccttcttgcatggtggttttgctcttacca |
325 |
Q |
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| T |
37821325 |
tgcaaccttgtctaaatgactagaattagttgtagcagtaaaattatcacaatcttgttgtcgattatttccttcttctatggtgctactgctcttacct |
37821424 |
T |
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| Q |
326 |
ctgatgggttgact |
339 |
Q |
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| T |
37821425 |
ctgatggtttgact |
37821438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 202 - 339
Target Start/End: Original strand, 37829540 - 37829680
Alignment:
| Q |
202 |
tgacaaggtaagttcttcttattatgctgcaaccttgtctaaatgactagaatttgttgtagtagtagaattatcaaactcttgtt---gattgtttcct |
298 |
Q |
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| T |
37829540 |
tgacaaggtaagtgcttcttattctgttgcaaccttgtctaaatgactagaattagttgtagcagtaaaattatcacaatcttgttgtcgattatttcct |
37829639 |
T |
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| Q |
299 |
tcttgcatggtggttttgctcttaccactgatgggttgact |
339 |
Q |
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|||| |||||| | |||||||||| ||||||| |||||| |
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| T |
37829640 |
tcttctatggtgctactgctcttacctctgatggtttgact |
37829680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 346
Target Start/End: Original strand, 37835274 - 37835388
Alignment:
| Q |
232 |
aaccttgtctaaatgactagaatttgttgtagtagtagaattatcaaactcttgttgattgtttccttcttgcatggtggttttgctcttaccactgatg |
331 |
Q |
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||||||||| |||||||||||| | ||||||| |||| | | || | ||||||||||||| |||||||||||||| ||||||| |||||||| |||||| |
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| T |
37835274 |
aaccttgtccaaatgactagaactagttgtagcagtaaattcattacactcttgttgattatttccttcttgcatagtggtttgactcttacctctgatg |
37835373 |
T |
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| Q |
332 |
ggttgactctgttgt |
346 |
Q |
| |
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|||||| ||||||| |
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| T |
37835374 |
ggttgatactgttgt |
37835388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 37848685 - 37848766
Alignment:
| Q |
265 |
agtagaattatcaaactcttgttgattgtttccttcttgcatggtggttttgctcttaccactgatgggttgactctgttgt |
346 |
Q |
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||||||||||||| || |||||||| | ||||||| |||||||||| | |||||||| | |||||| ||||||||||||| |
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| T |
37848685 |
agtagaattatcacacacttgttgactatttcctttttgcatggtgctactgctcttaactatgatggtttgactctgttgt |
37848766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 36864093 - 36864152
Alignment:
| Q |
287 |
tgattgtttccttcttgcatggtggttttgctcttaccactgatgggttgactctgttgt |
346 |
Q |
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||||| ||||||||||||||||||||||| |||||| | || ||||||||||| |||||| |
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| T |
36864093 |
tgattatttccttcttgcatggtggttttactcttaactcttatgggttgactttgttgt |
36864152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 346
Target Start/End: Original strand, 12281280 - 12281394
Alignment:
| Q |
232 |
aaccttgtctaaatgactagaatttgttgtagtagtagaattatcaaactcttgttgattgtttccttcttgcatggtggttttgctcttaccactgatg |
331 |
Q |
| |
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||||||||| |||||| ||||| | || |||| |||| | | || | |||| |||||||| |||||||||||||| ||||||| |||||||| || ||| |
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| T |
12281280 |
aaccttgtccaaatgattagaactagtcgtagcagtaaattcattacactcctgttgattatttccttcttgcatagtggtttgactcttacctctaatg |
12281379 |
T |
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| Q |
332 |
ggttgactctgttgt |
346 |
Q |
| |
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|||||| ||||||| |
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| T |
12281380 |
ggttgatactgttgt |
12281394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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