View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1803_low_13 (Length: 345)
Name: NF1803_low_13
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1803_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 7 - 331
Target Start/End: Original strand, 14085376 - 14085700
Alignment:
| Q |
7 |
ggcgtatgcgtctcttttcttcgtaaaatgtctccaagccattgaaggatgtctatcatgttttcttttctttagttttagcactaactcagcatgttca |
106 |
Q |
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| T |
14085376 |
ggcgtatgcgtctcttttcttcgtaaaatgtctccaagccattgaaggatgtctatcatgttttcttttctttagttttagcactaactcaacatgttca |
14085475 |
T |
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| Q |
107 |
tgtccttggcctcgcagtaactcagcagcctcgagactccttgagttctagcaactagaattggaatttgaggcaaaggattcacactggcagtaccact |
206 |
Q |
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| T |
14085476 |
tgtccttggcctcgcagtaactcagcagcctcgagactccttgagttctagcaactagaattggaatttgaggcaaaggattcacactggcagtaccact |
14085575 |
T |
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| Q |
207 |
ttccatgtgtctnnnnnnncaaaataaataacagaccattagaataagaaagacacaaagacacaatgaactcaaaggaagaagcataagaatcaacaaa |
306 |
Q |
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| T |
14085576 |
ttccatgtgtctaaaaaaacaaaataaataacagaccattagaataagaaagacacaaagacacaatgaactcaaaggaagaagcataagaatcaacaaa |
14085675 |
T |
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| Q |
307 |
atatggataaactcaacaaagtatg |
331 |
Q |
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| T |
14085676 |
atatggataaactcaacaaagtatg |
14085700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 39289585 - 39289642
Alignment:
| Q |
200 |
taccactttccatgtgtctnnnnnnncaaaataaataacagaccattagaataagaaa |
257 |
Q |
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| T |
39289585 |
taccactttccatgtgtctatacaagcaacataaataacacaccattagaataagaaa |
39289642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 39383751 - 39383694
Alignment:
| Q |
200 |
taccactttccatgtgtctnnnnnnncaaaataaataacagaccattagaataagaaa |
257 |
Q |
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| T |
39383751 |
taccactttccatgtgtctatacaagcaacataaataacacaccattagaataagaaa |
39383694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 12189990 - 12189888
Alignment:
| Q |
16 |
gtctcttttcttcgtaaaatgtctccaagccattgaaggatgtctatcatgttttcttttctttagttttagcactaactcagcatgttcatgtccttgg |
115 |
Q |
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|||| |||||||| |||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||| || |||||||||| |||||||| |
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| T |
12189990 |
gtcttttttcttcataaaatgtctccaaaccattgaaggaggtctagcaggttttcttttctttagttttagcactaccttagcatgttcaggtccttgg |
12189891 |
T |
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| Q |
116 |
cct |
118 |
Q |
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||| |
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| T |
12189890 |
cct |
12189888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 230 - 318
Target Start/End: Complemental strand, 12189772 - 12189684
Alignment:
| Q |
230 |
ataaataacagaccattagaataagaaagacacaaagacacaatgaactcaaaggaagaagcataagaatcaacaaaatatggataaac |
318 |
Q |
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||||| |||| |||||||| |||||||||| ||||||| | ||||||||| |||||||||| ||||||||||||||| |||| |||||| |
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| T |
12189772 |
ataaacaacaaaccattaggataagaaagaaacaaagaaaaaatgaactccaaggaagaagtataagaatcaacaaagtatgcataaac |
12189684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 12189884 - 12189826
Alignment:
| Q |
160 |
actagaattggaatttgaggcaaaggattcacactggcagtaccactttccatgtgtct |
218 |
Q |
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| T |
12189884 |
actagaattggaatttgagccaaaggattcacactagcagtatcagttttcatgtgtct |
12189826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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