View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1803_low_2 (Length: 791)
Name: NF1803_low_2
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1803_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 437 - 773
Target Start/End: Original strand, 25494062 - 25494398
Alignment:
| Q |
437 |
atggtgtatttaatgttgggttcaatgaagtggttattgaacttcagttaaggacaaactactcgagagaatttgagtttgatttttggctgagcaaact |
536 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||||| |||||||||||||| ||||||||||||| |||||||||||| |||||| | |||||||| |
|
|
| T |
25494062 |
atggtgtatttaatattgggttcaa----gtgattattgaccttcagttaaggacgaactactcgagaggatttgagtttgaattttggttaagcaaact |
25494157 |
T |
|
| Q |
537 |
ttatttatctctgatcaaacgccagattac----gtctcttttctttaaaattaaaagattaagacaaaaaatgacaatttttgggaattctaacatttt |
632 |
Q |
| |
|
|||||| | || ||||||| | ||||| ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25494158 |
ttatttgtgtccgatcaaatttcggattatcagagtctcttttctctaaaactaaaggattaagacaaaaaatgacaatttttgggaattctaacatttt |
25494257 |
T |
|
| Q |
633 |
ttgttgtgaatattcaggttcagtgtagattttggcaagaatgaggtagaggttatgaagcatgtgtcaatctacttagattcatctcagtcagaaatat |
732 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25494258 |
ttgttatgaatattcaggttcagtgtagattttggcaagaatgaggtagaagttatgaagcatgtgtcaatctacttagattcatctcagtcagaaatat |
25494357 |
T |
|
| Q |
733 |
tgtttgacttacttgccacttctgaattaaaggtgatatat |
773 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||||||| |
|
|
| T |
25494358 |
tgtttgacttacttgccacttcggagttgaaggtgatatat |
25494398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 41 - 297
Target Start/End: Original strand, 25493306 - 25493560
Alignment:
| Q |
41 |
gttaggtggccctctctttcccagagcctctcattcattttgctttagtatgtggtactcgatctgggcctgcacttcggtgttattctcctcgagacat |
140 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25493306 |
gttaggtggccctctcttttccagagcctctcattcactttgctttagtatgtggtactcgatctgggcctgcacttcgatgttattctcctcgagacat |
25493405 |
T |
|
| Q |
141 |
tgactctgaattaatggctgcaactctcgtaatttccttagaaatggtggcatttcgatagattttaatgcaaaggctgcatatgccagtaagatcctga |
240 |
Q |
| |
|
||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| |
|
|
| T |
25493406 |
tgactctgaattaatggatgcaa--ctcgcagtttccttagaaatggtggcatttcgatagattttaatgcaaaggttgcacataccagtaagatcctga |
25493503 |
T |
|
| Q |
241 |
aatggtaagttctatgaaattcaagtatgattgatgtcctttttggtaaatttaaac |
297 |
Q |
| |
|
||||||||||||||||| |||| | |||||||||||| ||||| |||| |||||||| |
|
|
| T |
25493504 |
aatggtaagttctatgagattctaatatgattgatgttcttttaggtagatttaaac |
25493560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 646 - 773
Target Start/End: Complemental strand, 28225970 - 28225843
Alignment:
| Q |
646 |
tcaggttcagtgtagattttggcaagaatgaggtagaggttatgaagcatgtgtcaatctacttagattcatctcagtcagaaatattgtttgacttact |
745 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28225970 |
tcaggttcagtgtagattttggcaagaatgaggtagaggttatgaagcatgtgtcaatctacttagattcatctcagtcagaaatattgtttgacttact |
28225871 |
T |
|
| Q |
746 |
tgccacttctgaattaaaggtgatatat |
773 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
28225870 |
tgccacttctgaattaaaggtaatatat |
28225843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 43 - 253
Target Start/End: Original strand, 33184435 - 33184643
Alignment:
| Q |
43 |
taggtggccctctctttcccagagcctctcattcattttgctttagtatgtggtactcgatctgggcctgcacttcggtgttattctcctcgagacattg |
142 |
Q |
| |
|
||||| || ||| ||| ||| |||||| | |||||||||||||| |||||||| || |||||||||||||| ||||| || ||||||||| || | |||| |
|
|
| T |
33184435 |
taggttgcactcccttaccccgagcctatgattcattttgctttggtatgtggcacccgatctgggcctgcccttcgatgctattctcctggaaaaattg |
33184534 |
T |
|
| Q |
143 |
actctgaattaatggctgcaactctcgtaatttccttagaaatggtggcatttcgatagattttaatgcaaaggctgcatatgccagtaagatcctgaaa |
242 |
Q |
| |
|
|| |||||| ||| ||||| ||||||||||||| |||| ||| || || ||| ||||| | |||||| ||||||||| ||| ||||| || ||| |
|
|
| T |
33184535 |
acgaagaattattggatgcaa--ctcgtaatttcctaagaagtggaggtcttgtgattgatttgacggcaaagactgcatatgtcagcaagattcttaaa |
33184632 |
T |
|
| Q |
243 |
tggtaagttct |
253 |
Q |
| |
|
|||| |||||| |
|
|
| T |
33184633 |
tggttagttct |
33184643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 658 - 766
Target Start/End: Original strand, 33184864 - 33184972
Alignment:
| Q |
658 |
tagattttggcaagaatgaggtagaggttatgaagcatgtgtcaatctacttagattcatctcagtcagaaatattgtttgacttacttgccacttctga |
757 |
Q |
| |
|
||||||||||||||| ||||| ||||| || ||||||||||||| ||| |||||| || || | |||| |||||| || ||| | |||||| ||||||| |
|
|
| T |
33184864 |
tagattttggcaagagcgaggttgaggtgatcaagcatgtgtcaaactatttagatccaactgactcagcaatattattggacctgcttgcctcttctga |
33184963 |
T |
|
| Q |
758 |
attaaaggt |
766 |
Q |
| |
|
||| ||||| |
|
|
| T |
33184964 |
attgaaggt |
33184972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University