View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1803_low_20 (Length: 258)
Name: NF1803_low_20
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1803_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 24 - 249
Target Start/End: Complemental strand, 39485677 - 39485446
Alignment:
| Q |
24 |
tcaaggtcttattctgactatgcacttgaattaccgtaa--------cataatttgttttaaatattctcttcattactttgacatcctttatgaccaaa |
115 |
Q |
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| T |
39485677 |
tcaaggtcttattctgactatgtagttgaattaccgtaagtccgtaacataatttgtcttaaatattctcttcattactttgacatcctttatgaccaaa |
39485578 |
T |
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| Q |
116 |
ctcacatgtttcataagtatattactttgatataagacatcaaagaccttcatcaaattaacatgtttggatcgctcaatccttnnnnnnnnnttatggt |
215 |
Q |
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| T |
39485577 |
ctcacatgtttcataagcatattactttgatataagacatcaaagaccttcatcaaattgacatgtttggatcgctcaatcctt-aaaaaaaattatggt |
39485479 |
T |
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| Q |
216 |
gctcactttcttgcgatgttagtttgtttcttct |
249 |
Q |
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| T |
39485478 |
gctcactttcttgcgatgttag-ttgtttcttct |
39485446 |
T |
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