View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1803_low_21 (Length: 250)
Name: NF1803_low_21
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1803_low_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 14085065 - 14085312
Alignment:
| Q |
6 |
agcagcacagaaagaatatttgttaacctgttnnnnnnnnntaaagaaaatatacattagtaactaacaaatcaaagccataaaatatgacagtatagca |
105 |
Q |
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| T |
14085065 |
agcatcacagaaagaatatttgttaacctgttaaaaaaaaataaagaaaatatacattagtaactaacaaatcaaagccataaaatatgacagtatagca |
14085164 |
T |
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| Q |
106 |
aactaaaatcaaagacaactatcaaaacagagtaaacatagactaaatcaaatacaaagttaaaac---aatgctaaaccaatattaacctaaaagagta |
202 |
Q |
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| T |
14085165 |
aactaaaatcaaagacaactatcaaaacagagtaaacatagactaaatcaaatacaaagttaaaacaaaaatgctaaaccaatattaccctaaaagagta |
14085264 |
T |
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| Q |
203 |
aaagaattaccttcatgtttttggacaaacattcatatgtttaagcat |
250 |
Q |
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| T |
14085265 |
aaagaatcaccttcatgtttttggacaaacattcatatgtttaagcat |
14085312 |
T |
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Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 52 - 167
Target Start/End: Complemental strand, 12190254 - 12190142
Alignment:
| Q |
52 |
aaaatatacattagtaactaacaaatcaaagccataaaatatgacagtatagcaaactaaaatcaaagacaactatcaaaacagagtaaacatagactaa |
151 |
Q |
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|||||||||||||||| |||| |||||||||||| ||||||| ||| || ||||||||| |||||||||| ||| ||||| ||||| || ||||||||| |
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| T |
12190254 |
aaaatatacattagta-ctaataaatcaaagccacaaaatataacacta--gcaaactaacatcaaagacatctaccaaaatagagttaaaatagactaa |
12190158 |
T |
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| Q |
152 |
atcaaatacaaagtta |
167 |
Q |
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| T |
12190157 |
atcaaatacaaagtta |
12190142 |
T |
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