View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1803_low_22 (Length: 250)
Name: NF1803_low_22
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1803_low_22 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 97 - 249
Target Start/End: Complemental strand, 3083289 - 3083138
Alignment:
| Q |
97 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
196 |
Q |
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| T |
3083289 |
gtagccattgtttgctcagagagaatgcagttaaatagctactataaatc-tgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgca |
3083191 |
T |
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| Q |
197 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaata |
249 |
Q |
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|||||||||| | |||||||||| | ||||||||||||||||||||||||||| |
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| T |
3083190 |
taagatgtagctgttccaattaaagtttgtgcacatgtatgttaactccaata |
3083138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 97 - 219
Target Start/End: Complemental strand, 38404072 - 38403950
Alignment:
| Q |
97 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
196 |
Q |
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||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| || | |
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| T |
38404072 |
gtagccattgtttgctcagagagaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagtagctgcaact |
38403973 |
T |
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| Q |
197 |
taagatgtagttattccaattaa |
219 |
Q |
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| T |
38403972 |
taagatgtagttattacaattaa |
38403950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 38404214 - 38404139
Alignment:
| Q |
16 |
atcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
91 |
Q |
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| T |
38404214 |
atcaataacaataatcacttttcaatttcaatcaattcaaacaaagaaagaaacaaaaaaattctcaagttaattt |
38404139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 97 - 249
Target Start/End: Complemental strand, 40910038 - 40909887
Alignment:
| Q |
97 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
196 |
Q |
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||||||||||||| |||| ||| |||||||| ||||||||||| ||||| ||||||||| |||||||||| |||||||||| |||||||||||| |||| |
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| T |
40910038 |
gtagccattgtttgctcagagagaatgcagttaaatagctactataaatc-tgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgca |
40909940 |
T |
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| Q |
197 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaata |
249 |
Q |
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|||||||||| | |||||||||| | ||||||||||||||||||||||||||| |
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| T |
40909939 |
taagatgtagctgttccaattaaagtttgtgcacatgtatgttaactccaata |
40909887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 33814188 - 33814113
Alignment:
| Q |
16 |
atcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
91 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
33814188 |
atcaataacaataatcacttttcaatttcaatcaattcaaacaaaggaagaaacacaaaaattatcaagttaattt |
33814113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 33873658 - 33873583
Alignment:
| Q |
16 |
atcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
91 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
33873658 |
atcaataacaataatcacttttcaatttcaatcaattcaaacaaaggaagaaacacaaaaattatcaagttaattt |
33873583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 97 - 219
Target Start/End: Complemental strand, 99662 - 99540
Alignment:
| Q |
97 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
196 |
Q |
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||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| || | |
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| T |
99662 |
gtagccattgtttgctcagagagaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagtagctgcaact |
99563 |
T |
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| Q |
197 |
taagatgtagttattccaattaa |
219 |
Q |
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||||||||||||||| ||||||| |
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| T |
99562 |
taagatgtagttattacaattaa |
99540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 99804 - 99729
Alignment:
| Q |
16 |
atcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
91 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||| |
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| T |
99804 |
atcaataacaataatcacttttcaatttcaatcaattcaaacaaagaaagaaacaaaaaaattctcaagttaattt |
99729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 24469255 - 24469303
Alignment:
| Q |
97 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaat |
145 |
Q |
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||||||||||||| |||| ||| |||| |||||||||||||||||||| |
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| T |
24469255 |
gtagccattgtttgctcagagagaatgtggtcaaatagctacttaaaat |
24469303 |
T |
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