View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1803_low_26 (Length: 229)
Name: NF1803_low_26
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1803_low_26 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 15823827 - 15823599
Alignment:
| Q |
1 |
atattgttttttcttaggaaaccacttgtttcctttgggaaacgacatatcattggtgaagctgtactcgaaattaatatcaggaacaccacaacgtggt |
100 |
Q |
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| T |
15823827 |
atattctttttccttagtaaatcacttgtttcctttgggaaacgacttatcattggtgaagctgtactcgaaattcatatcaggaacaccacatcgtggt |
15823728 |
T |
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| Q |
101 |
aacaagatttgttgtgaagtctcggtgtttaggtagccatcagtaacttggagtttgaaattttgttggtagatcttaatggctgagattgtttgttggt |
200 |
Q |
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| T |
15823727 |
aacaagatttgttgtgaagtctcagtgtttaggtagccattagtaacttggagattgaaattttgttggtagatcttaatggctgacattgtttgttggt |
15823628 |
T |
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| Q |
201 |
ctagaacattactgaatggcccatattgt |
229 |
Q |
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| T |
15823627 |
ctagaacattattgaatggcccatattgt |
15823599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 15813562 - 15813433
Alignment:
| Q |
77 |
atatcaggaacaccacaacgtggtaacaagatttgttgtgaagtctcggtgtttaggtagccatcagtaacttggagtttgaaattttgttggtagatct |
176 |
Q |
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|||||||||| |||||| || |||||| |||||| |||| |||||||||||||||||| | ||||||||||||| |||||| |||||||||| ||| |
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| T |
15813562 |
atatcaggaataccacatcgcggtaacgagattttttgtaaagtctcggtgtttaggt---taccagtaacttggagattgaaaaattgttggtaggtct |
15813466 |
T |
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| Q |
177 |
taatggctgagattgtttgttggtctagaacat |
209 |
Q |
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| T |
15813465 |
taatagcggatattgtttcctcgtctagaacat |
15813433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 15721136 - 15721058
Alignment:
| Q |
56 |
gtgaagctgtactcgaaattaatatcaggaacaccacaacgtggtaacaagatttgttgtgaagtctcggtgtttaggt |
134 |
Q |
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| T |
15721136 |
gtgaagctgtactcaaaattcatatcaggaacaccacatcttggtaacaagagtagttgtaaagtctcggagtctaggt |
15721058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 207
Target Start/End: Complemental strand, 15723640 - 15723495
Alignment:
| Q |
59 |
aagctgtactcgaaattaatatcaggaacaccacaacgtggtaacaagatttgttgtgaagtctcggtgtttaggtagccatcagtaacttggagtttga |
158 |
Q |
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|||| ||||||| | || |||||||||| |||||| | ||| ||| ||| ||||||| |||||||||||||||||| | ||||||||||||| |||| |
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| T |
15723640 |
aagccgtactcgtatttcatatcaggaataccacatcttggaaacgagaattgttgtaaagtctcggtgtttaggt---gaccagtaacttggagattga |
15723544 |
T |
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| Q |
159 |
aattttgttggtagatcttaatggctgagattgtttgttggtctagaac |
207 |
Q |
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| T |
15723543 |
aaaattgttggtaggtcttaatagcggatattgtttccttgtctagaac |
15723495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 15819452 - 15819363
Alignment:
| Q |
13 |
cttaggaaaccacttgtttcctttgggaaacgacatatcattggtgaagctgtactcgaaattaatatcaggaacaccacaacgtggtaa |
102 |
Q |
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|||||||||||| | ||||||||| ||| |||| |||||||||||| || |||| |||||| ||||||||||||||||| |||||||| |
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| T |
15819452 |
cttaggaaaccattggtttcctttcggatacgatatatcattggtggagtcgtacgtgaaattcatatcaggaacaccacatcgtggtaa |
15819363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 15717293 - 15717236
Alignment:
| Q |
77 |
atatcaggaacaccacaacgtggtaacaagatttgttgtgaagtctcggtgtttaggt |
134 |
Q |
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||||| ||||||||||| |||||||||| |||||||||| |||||||||||| ||||| |
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| T |
15717293 |
atatcgggaacaccacatcgtggtaacatgatttgttgtaaagtctcggtgtctaggt |
15717236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 15837915 - 15837838
Alignment:
| Q |
1 |
atattgttttttcttaggaaaccacttgtttcctttgggaaacgacatatcattggtgaagctgtactcgaaattaatatcag |
83 |
Q |
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||||| ||||| ||||| |||||||||||||||||| |||||| || |||| ||||||||||||||||||| ||||||| |
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| T |
15837915 |
atattctttttccttagtaaaccacttgtttcctttcggaaacaacttatc-----tgaagctgtactcgaaattcatatcag |
15837838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 207
Target Start/End: Complemental strand, 15729844 - 15729716
Alignment:
| Q |
77 |
atatcaggaacaccacaacgtggtaacaagatttgtt-gtgaagtctcggtgtttaggtagccatcagtaacttggagtttgaaattttgttggtagatc |
175 |
Q |
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|||||||||| |||||| || |||||| |||||| || || |||||||||||||||||| | ||||||||||||| |||||| ||||||||| || |
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| T |
15729844 |
atatcaggaataccacatcgcggtaacgagatttttttgtaaagtctcggtgtttaggt---gaccagtaacttggagattgaaaaattgttggtacgtc |
15729748 |
T |
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| Q |
176 |
ttaatggctgagattgtttgttggtctagaac |
207 |
Q |
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||||| || || ||||||| | ||||||||| |
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| T |
15729747 |
ttaatagcggatattgtttcctcgtctagaac |
15729716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 15836502 - 15836413
Alignment:
| Q |
13 |
cttaggaaaccacttgtttcctttgggaaacgacatatcattggtgaagctgtactcgaaattaatatcaggaacaccacaacgtggtaa |
102 |
Q |
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| T |
15836502 |
cttaggaaaccattggtttcctttcggaaaagatatatcattggttaagttgtacttcaaaatcctatcaggaacaccgcatcgtggtaa |
15836413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 33100239 - 33100110
Alignment:
| Q |
77 |
atatcaggaacaccacaacgtggtaacaagatttgttgtgaagtctcggtgtttaggtagccatcagtaacttggagtttgaaattttgttggtagatct |
176 |
Q |
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|||||||||| |||||| || |||||| |||||| |||| |||||||||||||||||| | ||||||||||||| |||||| |||||||||| ||| |
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| T |
33100239 |
atatcaggaataccacatcgcggtaacgagattttttgtaaagtctcggtgtttaggt---taccagtaacttggagattgaaaaattgttggtaggtct |
33100143 |
T |
|
| Q |
177 |
taatggctgagattgtttgttggtctagaacat |
209 |
Q |
| |
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|||| || || ||||||| | ||||||||||| |
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| T |
33100142 |
taatagcggatattgtttcctcgtctagaacat |
33100110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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