View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1803_low_27 (Length: 228)
Name: NF1803_low_27
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1803_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49385287 - 49385054
Alignment:
| Q |
1 |
aaaatgtatcaaaattatcgtccctgcaagcttagctcgattgatagagataatacattactatatgcaaggtccaggggttgaatcctgacactactct |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| || |||||||| ||||||||||| |
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| T |
49385287 |
aaaatgtatcaaaattatcgtacctgcaagcttagctcaattgatagagataatacgttaatatatgcaaggtccatggtttgaatcccgacactactct |
49385188 |
T |
|
| Q |
101 |
actatatatata------------annnnnnngcagatgtcattctttggaggaccatactctactttccacccacttttaattaaaatcgttctttttc |
188 |
Q |
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| |||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49385187 |
attatatatatatatatatatataatttttttgcagatgtcattctttggaggaccatactctattttccacccacttttaattaaaatcgttctttttc |
49385088 |
T |
|
| Q |
189 |
tcatttctattaaatcactagttcttcatctcac |
222 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
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| T |
49385087 |
tcatttctattaaatcactagttcttcatatcac |
49385054 |
T |
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