View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1803_low_29 (Length: 225)

Name: NF1803_low_29
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1803_low_29
NF1803_low_29
[»] chr5 (7 HSPs)
chr5 (1-225)||(40376724-40376948)
chr5 (12-225)||(40386980-40387193)
chr5 (1-225)||(40333691-40333915)
chr5 (24-221)||(40597789-40597986)
chr5 (9-82)||(40326137-40326210)
chr5 (157-221)||(40283369-40283433)
chr5 (12-67)||(40277581-40277636)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 40376724 - 40376948
Alignment:
Q  1 acttaatgcattgtcaaagggagattcaacttcattccttatctaccgaggaagcttcgactttgtttgaaaaacattcaggcattctcgacgaggatca 100  Q
    ||||||||||||||||||||||||||  |||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40376724 acttaatgcattgtcaaagggagattttacttgattcattatctacagaggaagcttcgactttgtttgaaaaacattcaggcattctcgaagaggatca 40376823  T
Q  101 ctcatcctcatttgacttatttaatgtggcatgtgaagttgcttttgagtgtgataggttacctggaaaaattattaaggtagggtcttccttaagaagt 200  Q
    ||| ||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||||||||||    
T  40376824 ctcctcctcatttgacttattgaatgtggcacgtgaagttgcttttgaatgtgataggttaccaggaaaaatcattaaggaagggtcttccttaagaagt 40376923  T
Q  201 aaaccaatggaggaatggaaaaaat 225  Q
    ||| || |||| |||||| ||||||    
T  40376924 aaatcattggaagaatgggaaaaat 40376948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 40386980 - 40387193
Alignment:
Q  12 tgtcaaagggagattcaacttcattccttatctaccgaggaagcttcgactttgtttgaaaaacattcaggcattctcgacgaggatcactcatcctcat 111  Q
    ||||||||| |||||| |||| || |||||||||| |||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| |||||||    
T  40386980 tgtcaaaggaagattctacttgatcccttatctacagaggaagcttcgacgttgtttgaaaaatattcaggcattctcgaagaggatcactcctcctcat 40387079  T
Q  112 ttgacttatttaatgtggcatgtgaagttgcttttgagtgtgataggttacctggaaaaattattaaggtagggtcttccttaagaagtaaaccaatgga 211  Q
    |||||||||| ||||||||| ||||| |||||||||| |||||| ||||||| |||||||| ||||||| |||||||||| |||||||||||||||||||    
T  40387080 ttgacttattgaatgtggcacgtgaaattgcttttgaatgtgatgggttaccaggaaaaatcattaaggcagggtcttccgtaagaagtaaaccaatgga 40387179  T
Q  212 ggaatggaaaaaat 225  Q
    ||||||| ||||||    
T  40387180 ggaatgggaaaaat 40387193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 40333691 - 40333915
Alignment:
Q  1 acttaatgcattgtcaaagggagattcaacttcattccttatctaccgaggaagcttcgactttgtttgaaaaacattcaggcattctcgacgaggatca 100  Q
    |||||||||| |||||||||||||||| |||| || | |||||||| |||||||||||||||||||||||||||||||| || ||||| || ||||||||    
T  40333691 acttaatgcactgtcaaagggagattctacttgatccattatctacagaggaagcttcgactttgtttgaaaaacattcgggaattctagaagaggatca 40333790  T
Q  101 ctcatcctcatttgacttatttaatgtggcatgtgaagttgcttttgagtgtgataggttacctggaaaaattattaaggtagggtcttccttaagaagt 200  Q
    ||| ||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||| |||| ||| ||||||| |||||||| ||||||||||    
T  40333791 ctcctcctcatttgacttattcaatgtggcacgtgaagttgcttttgaatgtgatgggttaccaggaagaatcattaaggaagggtctttcttaagaagt 40333890  T
Q  201 aaaccaatggaggaatggaaaaaat 225  Q
    ||| || ||||||||||| ||||||    
T  40333891 aaatcattggaggaatgggaaaaat 40333915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 40597986 - 40597789
Alignment:
Q  24 attcaacttcattccttatctaccgaggaagcttcgactttgtttgaaaaacattcaggcattctcgacgaggatcactcatcctcatttgacttattta 123  Q
    |||||||||  | |||||||||  |||||| ||| |||||||||  |||||||||| || ||||  || || |  ||||| || |||||||||||||| |    
T  40597986 attcaacttggtcccttatctatagaggaatcttggactttgttccaaaaacattctggtattcatgatgaagggcactcgtcttcatttgacttattga 40597887  T
Q  124 atgtggcatgtgaagttgcttttgagtgtgataggttacctggaaaaattattaaggtagggtcttccttaagaagtaaaccaatggaggaatggaaa 221  Q
    |||||||| |||||||| | ||||| || ||  |||||||  ||| |||||   | || || |||||||||||| |||||||||| ||||||||||||    
T  40597886 atgtggcacgtgaagtttcctttgaatgcgaagggttaccgagaacaattaaagatgtgggatcttccttaagaggtaaaccaattgaggaatggaaa 40597789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 40326137 - 40326210
Alignment:
Q  9 cattgtcaaagggagattcaacttcattccttatctaccgaggaagcttcgactttgtttgaaaaacattcagg 82  Q
    ||||||||||||||||||||||||  | | ||||| || |||||||||| |||||||||  |||||||||||||    
T  40326137 cattgtcaaagggagattcaacttagtcctttatccacagaggaagcttggactttgttcaaaaaacattcagg 40326210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 40283369 - 40283433
Alignment:
Q  157 ggttacctggaaaaattattaaggtagggtcttccttaagaagtaaaccaatggaggaatggaaa 221  Q
    ||||||||| ||||||||| ||||| || ||||||||  ||||||||||||| ||||||||||||    
T  40283369 ggttacctgaaaaaattataaaggtgggatcttccttcggaagtaaaccaattgaggaatggaaa 40283433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 40277581 - 40277636
Alignment:
Q  12 tgtcaaagggagattcaacttcattccttatctaccgaggaagcttcgactttgtt 67  Q
    ||||||||| ||||||||||| || |||||||||| |||||| ||| |||||||||    
T  40277581 tgtcaaaggaagattcaacttaatcccttatctacagaggaaacttggactttgtt 40277636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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