View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1803_low_4 (Length: 450)

Name: NF1803_low_4
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1803_low_4
NF1803_low_4
[»] chr1 (3 HSPs)
chr1 (1-441)||(5745437-5745877)
chr1 (116-178)||(42944080-42944142)
chr1 (257-305)||(19484080-19484128)
[»] scaffold0224 (1 HSPs)
scaffold0224 (116-178)||(26832-26894)
[»] chr8 (2 HSPs)
chr8 (111-172)||(10368808-10368869)
chr8 (115-167)||(10428498-10428550)
[»] chr6 (1 HSPs)
chr6 (114-149)||(31353105-31353140)
[»] chr2 (1 HSPs)
chr2 (111-166)||(21089314-21089369)
[»] chr7 (1 HSPs)
chr7 (108-172)||(37685374-37685438)
[»] chr3 (1 HSPs)
chr3 (123-163)||(10485411-10485451)


Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 5745437 - 5745877
Alignment:
Q  1 gcagtcattttttctattttgttctcatcgttgtctctttccttttatcttctgttgaagttttgttctgttctcatctaacctgttgatcaaatgttac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5745437 gcagtcattttttctattttgttctcatcgttgtctctttccttttatcttctgttgaagttttgttctgttctcatctaacctgttgatcaaatgttac 5745536  T
Q  101 caaagactattgttgagagttccacattggatgagatattgtctgaaaatgtatttatgagtgggagacatctgtcacaaaccggttttgtagggttcag 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  5745537 caaagactattgttgagagttccacattggatgagatattgtttgaaaatgtattaatgagtgggagacatctgtcacaaaccggttttgtagggttaag 5745636  T
Q  201 tttaacccaagtttaagatgatatcataacttatccatgacgtgttgggtcacctgctattgggccacttgagccacactctagatattctgtcatgggt 300  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5745637 tttaacccaagtttaagatggtatcataacttatccatgacgtgttgggtcacctgctattgggccacttgagccacactctagatattctgtcatgggt 5745736  T
Q  301 gtgagaaggtgtattggactgttgagagtccctaattagatgaaacatgactttaaattgtgtttcacattataagccagtcatgaattaggtccaaccc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5745737 gtgagaaggtgtattggactgttgagagtccctaattagatgaaacatgactttaaattgtgtttcacattataagccagtcatgaattaggtccaaccc 5745836  T
Q  401 aaattttaagaactattatcattaagatgtaaagatgatgt 441  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  5745837 aaattttaagaactattatcattaagatgtaaaaatgatgt 5745877  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 42944142 - 42944080
Alignment:
Q  116 agagttccacattggatgagatattgtctgaaaatgtatttatgagtgggagacatctgtcac 178  Q
    |||||||||||||||||||||||  | ||||||| || ||||| |||||||||||||| ||||    
T  42944142 agagttccacattggatgagatagggcctgaaaaagtgtttataagtgggagacatctctcac 42944080  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 19484080 - 19484128
Alignment:
Q  257 ctattgggccacttgagccacactctagatattctgtcatgggtgtgag 305  Q
    ||||||||||||| | |||||||||||||||| | ||||||||||||||    
T  19484080 ctattgggccactcgggccacactctagatatccagtcatgggtgtgag 19484128  T

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Target: scaffold0224 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 26832 - 26894
Alignment:
Q  116 agagttccacattggatgagatattgtctgaaaatgtatttatgagtgggagacatctgtcac 178  Q
    |||||||||||||||||||||||  | ||||||| || ||||| |||||||||||||| ||||    
T  26832 agagttccacattggatgagatagggcctgaaaaagtgtttataagtgggagacatctctcac 26894  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 10368808 - 10368869
Alignment:
Q  111 tgttgagagttccacattggatgagatattgtctgaaaatgtatttatgagtgggagacatc 172  Q
    |||| ||||| ||||||||||||||||||  | ||||||||||||||| |||||||| ||||    
T  10368808 tgttaagagtcccacattggatgagatataatttgaaaatgtatttataagtgggaggcatc 10368869  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 10428498 - 10428550
Alignment:
Q  115 gagagttccacattggatgagatattgtctgaaaatgtatttatgagtgggag 167  Q
    ||||||||||||||  ||||||||| | |||||||||| ||||| ||||||||    
T  10428498 gagagttccacattatatgagatatagcctgaaaatgtgtttataagtgggag 10428550  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 149
Target Start/End: Original strand, 31353105 - 31353140
Alignment:
Q  114 tgagagttccacattggatgagatattgtctgaaaa 149  Q
    |||||||||||||||||||||||||| |||||||||    
T  31353105 tgagagttccacattggatgagatatggtctgaaaa 31353140  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 21089314 - 21089369
Alignment:
Q  111 tgttgagagttccacattggatgagatattgtctgaaaatgtatttatgagtggga 166  Q
    ||||||||||| |||||||||||||||||    ||||||||||||||| |||||||    
T  21089314 tgttgagagtttcacattggatgagatatgacatgaaaatgtatttataagtggga 21089369  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 37685374 - 37685438
Alignment:
Q  108 tattgttgagagttccacattggatgagatattgtctgaaaatgtatttatgagtgggagacatc 172  Q
    ||||||||||||| | ||||| |||| ||||| ||||||||| ||  |||| |||||||||||||    
T  37685374 tattgttgagagtcctacattagatgtgatatggtctgaaaaagtgcttataagtgggagacatc 37685438  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 10485411 - 10485451
Alignment:
Q  123 cacattggatgagatattgtctgaaaatgtatttatgagtg 163  Q
    ||||||||||||||||| |||||||||||| ||||| ||||    
T  10485411 cacattggatgagatatagtctgaaaatgtgtttataagtg 10485451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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