View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1803_low_6 (Length: 444)
Name: NF1803_low_6
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1803_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Complemental strand, 35405499 - 35405087
Alignment:
| Q |
16 |
atcaactactatgagattgaaatctatgctgcatataacctcttccatcgtgtgagtattttatatgttgcaaaactctgtccaatcaaaaccaacaact |
115 |
Q |
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| T |
35405499 |
atcaactactatgagattgaaatctatgctgcatataacctcttccatcgtgtgagtattttatatgttgcaaaactctgtccaatcaaaaccaacaact |
35405400 |
T |
|
| Q |
116 |
ttggaattgaaatctcaaggagctttttatatcctaaggtcttttcttctatgaaacaaatatttataaagtgatcaactcatcatgtattcataagaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35405399 |
ttggaattgaaatctcaaggagctttttatatcctaaggtcttttcttctatgaaacaaatatttataaagtgatcaactcatcatgtattcataagaaa |
35405300 |
T |
|
| Q |
216 |
gtgctatcaagtgtcttttaaagcaaacaatcatgagattttatttctaacaagtgaataaacatgagcaactgagcaatgcagcataagaacttcttgc |
315 |
Q |
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| T |
35405299 |
gtgctatcaagtttcttttaaagcaaacaatcatgagattttatttctaacaagtgaataaacatgagcaactgagcaatgcagcataagaacttcttgc |
35405200 |
T |
|
| Q |
316 |
ttgttcattttggagtttgagtctgacagaataacgttgcatctttcttttattttgatgttgcacctccaatgtaaagaactagctagaaagtaaattt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
35405199 |
ttgttcattttggagtttgagtctgacagaataacgttgcatctttcttttattttgatgttgcacctgcaatgtaaaaaactagctagaaagtaaattt |
35405100 |
T |
|
| Q |
416 |
ccacatatattca |
428 |
Q |
| |
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| T |
35405099 |
ccacatatattca |
35405087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 27 - 242
Target Start/End: Complemental strand, 35400695 - 35400480
Alignment:
| Q |
27 |
tgagattgaaatctatgctgcatataacctcttccatcgtgtgagtattttatatgttgcaaaactctgtccaatcaaaaccaacaactttggaattgaa |
126 |
Q |
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||||||||||||||||| ||||||||||||| ||||| | ||||||||| |||||| ||||||| |||| |||||||||||||||| ||||||||||| |
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| T |
35400695 |
tgagattgaaatctatgttgcatataacctcccccatcatttgagtatttactatgttacaaaactgtgtcaaatcaaaaccaacaacattggaattgaa |
35400596 |
T |
|
| Q |
127 |
atctcaaggagctttttatatcctaaggtcttttcttctatgaaac-aaatatttataaagtgatcaactcatcatgtattcataagaaagtgctatcaa |
225 |
Q |
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|||||| ||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35400595 |
atctcacggagctttttatatcctaa-gttttttcttctatgaaacaaaatatttataaagtgatcaactcatcatgtattcataagaaagtgctatcaa |
35400497 |
T |
|
| Q |
226 |
gtgtcttttaaagcaaa |
242 |
Q |
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| T |
35400496 |
gtttctttcaacgcaaa |
35400480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 237 - 402
Target Start/End: Complemental strand, 35400339 - 35400175
Alignment:
| Q |
237 |
agcaaacaatcatgagattttatttctaacaagtgaataaacatgagcaactgagcaatgcagcataagaacttcttgcttgttcattttggagtttgag |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| |
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| T |
35400339 |
agcaaacaatcatgagattttatttctaacaagtgaataaacatgagcaactgagcaatgcaacataagaaattcttgcttgttcattttggaggttgag |
35400240 |
T |
|
| Q |
337 |
tctgacagaataacgttgcatctttcttttattttgatgttgcacctccaatgtaaagaactagct |
402 |
Q |
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| T |
35400239 |
tctgacacaataacactgcatctttcttttattttgatgttgcaccttcaaagt-aagaactagct |
35400175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 39638314 - 39638368
Alignment:
| Q |
102 |
caaaaccaacaactttggaattgaaatctcaaggagctttttatatcctaaggtc |
156 |
Q |
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||||| ||||||||||||||||||||| ||| | ||||||| ||||| ||||||| |
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| T |
39638314 |
caaaatcaacaactttggaattgaaatttcatgaagcttttaatatcttaaggtc |
39638368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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