View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_high_13 (Length: 359)
Name: NF18040_high_13
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 7e-77; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 35 - 192
Target Start/End: Complemental strand, 24406385 - 24406228
Alignment:
| Q |
35 |
ctccacctccaccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaagctttcggatataacaacttgaa |
134 |
Q |
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| T |
24406385 |
ctccacctccaccatctccttcacctcctccatatcatccctaccgctataactaacccccacctcccgcgtattaagctttcggatataacaacttgaa |
24406286 |
T |
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| Q |
135 |
attttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt |
192 |
Q |
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| T |
24406285 |
attttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt |
24406228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 24420373 - 24420158
Alignment:
| Q |
20 |
cttatatctacaagactccacctccaccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaagctttcgg |
119 |
Q |
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| T |
24420373 |
cttatatttacaagtctccacctccaccatctccatcacctcctccatatcatccctacctctacaactcacccccgcctcccatctattaagcttccgg |
24420274 |
T |
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| Q |
120 |
atataacaacttgaaattttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgttgataataaataaaacagtctactctc |
219 |
Q |
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||| | |||||| |||||||||||||| |||| ||||||||||||||||||||||| || |||||||| ||||||| |||||| || |
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| T |
24420273 |
ctat---tatttgaaaaaatttcaatgaattatattcagcattgttgtggttaatttgtattcaatcttttgtt-------aataaaaaagtctatgctt |
24420184 |
T |
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| Q |
220 |
cacattgaattaagagccttattttg |
245 |
Q |
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| T |
24420183 |
tacagtgaattaagagccttattttg |
24420158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 41 - 178
Target Start/End: Original strand, 24471268 - 24471402
Alignment:
| Q |
41 |
ctccaccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaagctttcggatataacaacttgaaattttt |
140 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||| | ||||||||| |||||| |||||||||| ||| ||| | ||||||||||| |
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| T |
24471268 |
ctccaccatctccatcacctcctccatatcatccctacctctacagctcacccccgcctcccatctattaagcttccggctat---catttgaaattttt |
24471364 |
T |
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| Q |
141 |
tcaatgaattatgttcaacattgttgtggttaatttgt |
178 |
Q |
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|||||||||||| |||| |||||||||||||||||||| |
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| T |
24471365 |
tcaatgaattatattcagcattgttgtggttaatttgt |
24471402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 35 - 192
Target Start/End: Complemental strand, 24476002 - 24475844
Alignment:
| Q |
35 |
ctccacctccaccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaag-ctttcggatataacaacttga |
133 |
Q |
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|||| ||||| |||||||| | |||||||| || |||| || | ||||| ||||||||||| ||||||| ||||||| ||| ||| |||| | |||| |
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| T |
24476002 |
ctcctcctcccccatctccataacctcctccatctcattccgatctctacaactcacccccgcctcccgtctattaaggcttccggctatagttatttga |
24475903 |
T |
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| Q |
134 |
aattttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt |
192 |
Q |
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||||||||||| ||||||| |||| ||||||| |||||||||||||| |||||||||| |
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| T |
24475902 |
aattttttcaaagaattatattcagcattgttctggttaatttgtatcgaagcttttgt |
24475844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 24406231 - 24406184
Alignment:
| Q |
247 |
ttgtagttcaattgtgaatgtatggtgttcatccataagtctatagta |
294 |
Q |
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| T |
24406231 |
ttgtagttcaattgtgaatgtatggtgttcatccataagtctatagta |
24406184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 24406487 - 24406458
Alignment:
| Q |
35 |
ctccacctccaccatctccttcacctcctc |
64 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24406487 |
ctccacctccaccatctccttcacctcctc |
24406458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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