View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_high_14 (Length: 340)
Name: NF18040_high_14
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 27603687 - 27603954
Alignment:
| Q |
18 |
gaatacatatatgtatacagcataaatatgaagttaaaagcaatataacaggggagggggtatttactgtcagtataaatgctccgttttaagcttgttc |
117 |
Q |
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| T |
27603687 |
gaatacatatatgtatacagcataaatatgaagttaaaagcaatataacaggggagggggtatttactgtcagtataaatgctccgttttaagcttgttc |
27603786 |
T |
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| Q |
118 |
tctcattccatgtcataggtcaatcaccttggctgcacccccagggcatcttcccgattttaaaatgttggctctgtttggatgtggggcttttcttttg |
217 |
Q |
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| T |
27603787 |
tctctttccatgtcataggtcaatcaccttggctgcacccccagggcatcttcccgattttaaaatgttggctctgtttggatgtggggcttttcttttg |
27603886 |
T |
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| Q |
218 |
agaggtgctgggtgtactattaatgatctcattgatcgggatattgatacaaaggtaaatgtcattgc |
285 |
Q |
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| T |
27603887 |
agaggtgctgggtgtactattaatgatctcattgatcgggatattgatacaaaggtaaatgtcattgc |
27603954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 27604397 - 27604433
Alignment:
| Q |
294 |
ggttgctgtcttttttgtgtatattgttattcctatg |
330 |
Q |
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| T |
27604397 |
ggttgctgtcttttttgtgtttattgttattcctatg |
27604433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 52210659 - 52210382
Alignment:
| Q |
18 |
gaatacatatatgtatacagcataaatatgaagttaaaagcaatata-------------acaggggagggggtatttactgtcagtataaatgctccgt |
104 |
Q |
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| T |
52210659 |
gaatacatatttgtatacaacataaatatgaagttaaaagcaatatacttttttcctataacagaggagggggtatttactgtcagtataaatgctccat |
52210560 |
T |
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| Q |
105 |
tttaagcttgttctctcattccatgtcataggtcaatcaccttggctgcacccccagggcatcttcccgattttaaaatgttggctctgtttggatgtgg |
204 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52210559 |
tttaagcttgttctctctttccatgtcataggtcaatcaccttggctgcacccccagggcatcttcccgattttaaaatgttggctctgtttggatgcgg |
52210460 |
T |
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| Q |
205 |
ggcttttcttttgagaggtgctgggtgtactattaatgatctcattgatcgggatattgatacaaaggtaaatgtcattgc |
285 |
Q |
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| T |
52210459 |
ggcttttcttttgagaggtgctgggtg---tattaatgttctcattgatcgggatattgatacaaaggtaaatgtcattgc |
52210382 |
T |
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