View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_high_17 (Length: 305)
Name: NF18040_high_17
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_high_17 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (7 HSPs) |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 25793604 - 25793300
Alignment:
| Q |
1 |
ttattgaattcaagaaagactaaatggaagcagtaaactattatcagaaaatgggacaaaaatttaagcattatactccctccgtatcatgattttgaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| |
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| T |
25793604 |
ttattgaattcaagaaagactaaatggaagcagtaaactattatcagaaaatgggacaaaaatttaagcattatactccctccatctcatgatttggaag |
25793505 |
T |
|
| Q |
101 |
gactgcaagttactaaattttcggccgtttcaagaaactctataatannnnnnngttcctagtggtcagattatgtatgaaaaatgataaatttaccaat |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25793504 |
gactgcaagttactaaattttcggccatttcaagaaactctttaatatttttttgttcctagtggtcagattatgtatgaaaaatgataaatttaccaat |
25793405 |
T |
|
| Q |
201 |
tgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgcttcaacaatataaacacaaccctaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25793404 |
tgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgcttcaacaatataaacacagccctaa |
25793305 |
T |
|
| Q |
301 |
aatga |
305 |
Q |
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||||| |
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| T |
25793304 |
aatga |
25793300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 192 - 305
Target Start/End: Original strand, 10365757 - 10365870
Alignment:
| Q |
192 |
tttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgcttcaacaatataaaca |
291 |
Q |
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| T |
10365757 |
tttaccaactgcttcaaccaggcgtagaaccatctttccggtgtgaactcctttgacacaacttgaccaataaactttgtatgcatcgacaatataaacg |
10365856 |
T |
|
| Q |
292 |
caaccctaaaatga |
305 |
Q |
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|||||||||||||| |
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| T |
10365857 |
caaccctaaaatga |
10365870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 10136539 - 10136450
Alignment:
| Q |
193 |
ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgcttcaaca |
282 |
Q |
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||||||||||||||||| || | |||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||| |||| |
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| T |
10136539 |
ttaccaattgcttcaaccaggcgtagaaccatctttccggtgtgaactcctttgacacagcttgaccaatagactttgtatgcttaaaca |
10136450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 10213001 - 10212912
Alignment:
| Q |
193 |
ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgcttcaaca |
282 |
Q |
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|||||||||||||| || ||| |||||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||| |||| |
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| T |
10213001 |
ttaccaattgcttcgaccagaggcagaaccatctttccggagtgaactcctttgacacagcttgaccaatagactttgtatgcttaaaca |
10212912 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 196 - 305
Target Start/End: Original strand, 10378208 - 10378317
Alignment:
| Q |
196 |
ccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgcttcaacaatataaacacaac |
295 |
Q |
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|||||||||||||| | | |||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||| |||| |
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| T |
10378208 |
ccaattgcttcaaccaagtgtagaaccatctttccggcgtgaactcctttgacaccacttgaccaatagactttgtatgtatcgacaatataaacgcaac |
10378307 |
T |
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| Q |
296 |
cctaaaatga |
305 |
Q |
| |
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|||||||||| |
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| T |
10378308 |
cctaaaatga |
10378317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 10133918 - 10133835
Alignment:
| Q |
193 |
ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgct |
276 |
Q |
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|||||||||||||| || ||| ||| |||||| ||||| |||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
10133918 |
ttaccaattgcttcgaccagacgcaaaaccatatttccggtgtgaactcctttgacacagcttgaccaatagactttgtatgct |
10133835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 10102078 - 10101994
Alignment:
| Q |
193 |
ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgacacaacttgtccaatagactttgtatgctt |
277 |
Q |
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| T |
10102078 |
ttaccaattgcgtcgacctgaggcagaaccatctttccggagtgaactcctttgacacagcttgaccaatagactttgtatgctt |
10101994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 10075098 - 10075062
Alignment:
| Q |
215 |
gcagaaccatctttccagtgtgaactcctttgacaca |
251 |
Q |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
10075098 |
gcagaaccatatttccagtgtgaactcctttgacaca |
10075062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 84952 - 84896
Alignment:
| Q |
193 |
ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactcctttgaca |
249 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
84952 |
ttaccaattgcttcaaccagcctcagaaccatctttccagtgtgaactcctttgaca |
84896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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