View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_high_2 (Length: 638)
Name: NF18040_high_2
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 584; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 10 - 620
Target Start/End: Complemental strand, 30409443 - 30408835
Alignment:
| Q |
10 |
gcacagactgactagttgggaatgggaagtgtatggttttcgttaagctaagccccctttgaatttgagttaaaagaaaacatctaaactctaaacacaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409443 |
gcacagactgactagttgggaatgggaagtgtatggttttcgttaagctaagccc--tttgaatttgagttaaaagaaaacatctaaactctaaacacaa |
30409346 |
T |
|
| Q |
110 |
taaagtgttgcgttatttgaatatcaaaatacatacatcacattatgcagaggggtcatatcagaggacattatatttaacatcaaattaaaacttctca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409345 |
taaagtgttgcgttatttgaatatcaaaatacatacatcacattatgcagaggggtcatatcagaggacattatatttaacatcaaattaaaacttctca |
30409246 |
T |
|
| Q |
210 |
taaagaaaactgcaactgccaatattgacttaaaaaagatttaggtacctgtgtctatatactcaggtgtcgcgttaatttgagggcccatatccaccac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409245 |
taaagaaaactgcaactgccaatattgacttaaaaaagatttaggtacctgtgtctatatactcaggtgtcgcgttaatttgagggcccatatccaccac |
30409146 |
T |
|
| Q |
310 |
atcgtagtcggacatattactatctgatctaacttttaaaaacccaagaaagaatagttttgcattgtagttctgtcattcacataaacaaatttacaaa |
409 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409145 |
atcgtagtcgggcatattactatctgatctaacttttaaaaacccaagaaataatagttttgcattgtagttctgtcattcacataaacaaatttacaaa |
30409046 |
T |
|
| Q |
410 |
cttgattaactaattaacgatccatctctaagcttgtaaaatcaatgaatccacttactgaatcaatcaagattttcgaagttttgaagtctccatgtat |
509 |
Q |
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| T |
30409045 |
cttgattaactaattaacgatccatctctaagcttgtaaaatcaatgaatccacttactgaaccaatcaagattttcgaagttttgaagtctccatgtat |
30408946 |
T |
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| Q |
510 |
ctttcccacttcatcactgtgtagaaatgcaagacccttggcagcatcaagagctatcttcatacgaattttccaagtgagtggtagaaagttagaaaag |
609 |
Q |
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| T |
30408945 |
ctttcccactttatcactgtgtagaaatgcaagacccttggcagcatcaagagctatcttcatacgaattttccaagtgagtggtagaaagttagaaaag |
30408846 |
T |
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| Q |
610 |
cctgctccata |
620 |
Q |
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||||||||||| |
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| T |
30408845 |
cctgctccata |
30408835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 363 - 619
Target Start/End: Complemental strand, 30405260 - 30404997
Alignment:
| Q |
363 |
atagttttgcattgtagttctgtcattcacataaacaaatttacaaac-ttgattaactaattaacgatccatctctaagcttgt------aaaatcaat |
455 |
Q |
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| T |
30405260 |
atagttttgcattgtggttctgtcattgacataaaggaatttataaaccttgtgaaactagcaaactctccatctctaagcttgttagtgtaaaatcaac |
30405161 |
T |
|
| Q |
456 |
gaatccacttactgaatcaatcaagattttcgaagttttgaagtctccatgtatctttcccacttcatcactgtgtagaaatgcaagacccttggcagca |
555 |
Q |
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|||| |||||| ||||||||||||||||| |||||||| |||| |||||||||| ||||||||||||||| ||||||||||||||||| ||| || |
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| T |
30405160 |
taatcaacttacagaatcaatcaagattttagaagttttcaagtttccatgtatcacattcacttcatcactgtgaagaaatgcaagacccttagcaaca |
30405061 |
T |
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| Q |
556 |
tcaagagctatcttcatacgaattttccaagtgagtggtagaaagttagaaaagcctgctccat |
619 |
Q |
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| T |
30405060 |
tcaagagctatcttcattcggattttccatgtgagtggctgaaagttagaagcccctgctccat |
30404997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 457 - 606
Target Start/End: Complemental strand, 30422201 - 30422052
Alignment:
| Q |
457 |
aatccacttactgaatcaatcaagattttcgaagttttgaagtctccatgtatctttcccacttcatcactgtgtagaaatgcaagacccttggcagcat |
556 |
Q |
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||||||||||| |||||||||||||| || |||||||||||||||| || |||| | | |||||||||||||| ||||||||||||||||| |||| || |
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| T |
30422201 |
aatccacttacagaatcaatcaagatgttagaagttttgaagtctcgatatatcacttcgacttcatcactgtgaagaaatgcaagacccttagcagaat |
30422102 |
T |
|
| Q |
557 |
caagagctatcttcatacgaattttccaagtgagtggtagaaagttagaa |
606 |
Q |
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|||||||||||||||| || |||||||||| |||||| |||||| |||| |
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| T |
30422101 |
caagagctatcttcattcggattttccaagagagtggctgaaagtaagaa |
30422052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 439 - 593
Target Start/End: Complemental strand, 30401818 - 30401662
Alignment:
| Q |
439 |
aagcttgtaaaatcaat--gaatccacttactgaatcaatcaagattttcgaagttttgaagtctccatgtatctttcccacttcatcactgtgtagaaa |
536 |
Q |
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|||||||||| |||||| |||||||||||| |||||||||| ||| || ||||| ||||| |||||||||||| ||||| |||||||| ||||| |
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| T |
30401818 |
aagcttgtaagatcaatatgaatccacttacagaatcaatcaggatattagaagtattgaaatctccatgtatcacattcactttttcactgtgaagaaa |
30401719 |
T |
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| Q |
537 |
tgcaagacccttggcagcatcaagagctatcttcatacgaattttccaagtgagtgg |
593 |
Q |
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|||||||||||| |||||||||||||||||||| || || |||||||| | |||||| |
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| T |
30401718 |
tgcaagaccctttgcagcatcaagagctatcttgattcgcattttccatgagagtgg |
30401662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 30411898 - 30411848
Alignment:
| Q |
67 |
tttgaatttgagttaaaa----gaaaacatctaaactctaaacacaataaa |
113 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
30411898 |
tttgaatttgagttaaaatatagaaaacatctaaactctaaatacaataaa |
30411848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 436 - 606
Target Start/End: Complemental strand, 31445909 - 31445739
Alignment:
| Q |
436 |
tctaagcttgtaaaatcaatgaatccacttactgaatcaatcaagattttcgaagttttgaagtctccatgtatctttcccacttcatcactgtgtagaa |
535 |
Q |
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|
|||||||||||||||||||| ||| |||||||||||||||||||||| || || ||||| || ||||| |||||| | ||||||||| |||| |||| |
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| T |
31445909 |
tctaagcttgtaaaatcaataaattcacttactgaatcaatcaagatcttagatgttttaaattctccgtgtatcatattcacttcatcgatgtgaagaa |
31445810 |
T |
|
| Q |
536 |
atgcaagacccttggcagcatcaagagctatcttcatacgaattttccaagtgagtggtagaaagttagaa |
606 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| || |||||||||| |||||| | ||||||||| |
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| T |
31445809 |
atgcaagacccttagcagcatcaagagctatcttcattcggattttccaagagagtggctggaagttagaa |
31445739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 519 - 577
Target Start/End: Complemental strand, 41442383 - 41442325
Alignment:
| Q |
519 |
ttcatcactgtgtagaaatgcaagacccttggcagcatcaagagctatcttcatacgaa |
577 |
Q |
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|||||||||||| ||||||||||| || |||||||| |||||||| | ||||| ||||| |
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| T |
41442383 |
ttcatcactgtgcagaaatgcaagccctttggcagcgtcaagagcaaccttcagacgaa |
41442325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 572
Target Start/End: Complemental strand, 34150400 - 34150346
Alignment:
| Q |
518 |
cttcatcactgtgtagaaatgcaagacccttggcagcatcaagagctatcttcat |
572 |
Q |
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||||||| ||||| ||| ||||||||||||| |||||||||||||| | |||||| |
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| T |
34150400 |
cttcatcgctgtgaagatatgcaagacccttagcagcatcaagagcaaccttcat |
34150346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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