View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_high_20 (Length: 294)
Name: NF18040_high_20
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 27732648 - 27732935
Alignment:
| Q |
1 |
cagaatgaatgagtgagtagcgatgcttattaataggatttctataagtttgactgagtcttccattatttagaataggggttttacttacaggataatt |
100 |
Q |
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| T |
27732648 |
cagaatgaatgagtgagtagcgatgcttattaataggatttctataagtttgactgagtcttccattatttagaataggggttttacttacaagataatt |
27732747 |
T |
|
| Q |
101 |
ttagtcaaattcgcaggggtttatcaactaattcact---ttctctaggtgttatctaaggctctttttatcaagcatttcagcactttttgtcaaattc |
197 |
Q |
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||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27732748 |
ttagtcaaattcgtagggatttatcaactaattcactaatttctctaggtgttatctaaggctctttttatcaagcatttcagcactttttgtcaaattc |
27732847 |
T |
|
| Q |
198 |
gtagatcacaatgtttaagtgtgttcagttttatcatttcatctcaaacaagtattgagtatcttttaagatcacaaacacaaacctt |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27732848 |
gtagatcacaatgtttaagtgtgttcagttttatcatttcatctcaaacaagtattgagtatcttttaagatcacaaacacaaacctt |
27732935 |
T |
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