View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_high_26 (Length: 253)
Name: NF18040_high_26
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 51488987 - 51489144
Alignment:
| Q |
17 |
aaaaattatattgagggtaaatcaatctatcctcctgagattaatttctcctaacatatgttttattatacgcaccaattatgaatcgaacctttcacca |
116 |
Q |
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| T |
51488987 |
aaaaattatattgagggtaaatcaatctatcctcctcagattaatttctcctaacatatgttttattatacgcaccaattatgaatcgaacctttcacca |
51489086 |
T |
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| Q |
117 |
aaagattaatagtatgtctggaaaaccaataggtaccactacacatgcatttaattga |
174 |
Q |
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| T |
51489087 |
aaagattaatagtatgtctggaaaaccaataggtaccactacacatgcatttaattga |
51489144 |
T |
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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 51489179 - 51489244
Alignment:
| Q |
175 |
tgaagctgcatgagtagcttttggtttgccgttgattttcaccatggaaacaaaaattagtattat |
240 |
Q |
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| T |
51489179 |
tgaagctgcatgagtagcttttggtttgccgttgattttcaccatggaaacaaaaattagtattat |
51489244 |
T |
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