View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_high_29 (Length: 240)
Name: NF18040_high_29
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 27732651 - 27732428
Alignment:
| Q |
1 |
tctgcctttcatatttcataaaccctgcgctatcaatcgatcatccattctgtctcctttcttaaaccctgcaatcatgaggaagaaaggtactccttct |
100 |
Q |
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| T |
27732651 |
tctgcctttcatatttcttaaaccctgcgctatcaatcgatcatccattctgtctcctttcttaaaccctgcaatcatgaggaagaaaggtactccttct |
27732552 |
T |
|
| Q |
101 |
tgttccttttataatccatgttcttcttttcattcattccatgataatgagaaatctcaaggtccgagaatgtatgagtgtgagttgtgcggcaagaggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27732551 |
tgttccttttataatccatgttcttcttttcattcattccatgataatgagaaatctcaaggtccgagaatgtatgagtgtgagttgtgcggcaaaaggt |
27732452 |
T |
|
| Q |
201 |
tcaactctggcaacgcactcggtg |
224 |
Q |
| |
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||||||||||||| |||||||||| |
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| T |
27732451 |
tcaactctggcaatgcactcggtg |
27732428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 76 - 224
Target Start/End: Complemental strand, 21156058 - 21155910
Alignment:
| Q |
76 |
catgaggaagaaaggtactccttcttgttccttttataatccatgttcttcttttcattcattccatgataatgagaaatctcaaggtccgagaatgtat |
175 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |
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| T |
21156058 |
catgaggaagaaaggcactccttcttgttccttttataatccatgttcttcttttcattcattcgatgataatgagaaatctcaacgttcgagaatgtat |
21155959 |
T |
|
| Q |
176 |
gagtgtgagttgtgcggcaagaggttcaactctggcaacgcactcggtg |
224 |
Q |
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| T |
21155958 |
gactgtgatttgtgcggcaagaagttcaactctggcaacgcactcggtg |
21155910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 74 - 207
Target Start/End: Original strand, 21073523 - 21073656
Alignment:
| Q |
74 |
atcatgaggaagaaaggtactccttcttgttccttttataatccatgttcttcttttcattcattccatgataatgagaaatctcaaggtccgagaatgt |
173 |
Q |
| |
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||||||||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| || |||| || | |
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| T |
21073523 |
atcatgaggaagaaaaacactccctattgttccttttataatccatgttcttcttatcattcattcgatgataacgagaaatctcaacgttcgagcatat |
21073622 |
T |
|
| Q |
174 |
atgagtgtgagttgtgcggcaagaggttcaactc |
207 |
Q |
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| T |
21073623 |
atgagtgtgagttgtgcggcaaaaggttcaactc |
21073656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 85 - 224
Target Start/End: Complemental strand, 3074225 - 3074086
Alignment:
| Q |
85 |
gaaaggtactccttcttgttccttttataatccatgttcttcttttcattcattccatgataatgagaaatctcaaggtccgagaatgtatgagtgtgag |
184 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||| ||| ||||| ||||||||| |
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| T |
3074225 |
gaaaggtactccttcttgttccttttataatccgtgttcttcttttcattcattcaatgatattgagaaatctcaaggttcgacaatgtgtgagtgtgat |
3074126 |
T |
|
| Q |
185 |
ttgtgcggcaagaggttcaactctggcaacgcactcggtg |
224 |
Q |
| |
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||||| ||| |||||||||| |||||| |||||||||| |
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| T |
3074125 |
ttgtgtaacaaaaggttcaactttggcaatgcactcggtg |
3074086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 224
Target Start/End: Original strand, 21249086 - 21249221
Alignment:
| Q |
89 |
ggtactccttcttgttccttttataatccatgttcttcttttcattcattccatgataatgagaaatctcaaggtccgagaatgtatgagtgtgagttgt |
188 |
Q |
| |
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|||||||| ||||||||||||| ||||| |||||||||||| ||| || || ||||||||||| ||||||| | ||||||||||||||||| |||| |
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| T |
21249086 |
ggtactccgtcttgttcctttttgaatccttgttcttcttttaattagtttgatcgtaatgagaaatatcaaggttctagaatgtatgagtgtgatttgt |
21249185 |
T |
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| Q |
189 |
gcggcaagaggttcaactctggcaacgcactcggtg |
224 |
Q |
| |
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||| ||| ||||||||| |||||||| ||||||||| |
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| T |
21249186 |
gcgacaaaaggttcaacgctggcaacacactcggtg |
21249221 |
T |
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