View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_high_3 (Length: 555)
Name: NF18040_high_3
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 190 - 537
Target Start/End: Original strand, 42800377 - 42800725
Alignment:
| Q |
190 |
tgcatgtttggtaccatagttggttggtttgtcagaatcacggtgaaccaccatgattctgatatactatcgtgataccaaacatgcacataaattttca |
289 |
Q |
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| T |
42800377 |
tgcatgtttggtaccatagttggttggtttgtcagaatcacggtgaaccaccatgattctgatatactatcgtgataccaaacatgcacataaattttca |
42800476 |
T |
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| Q |
290 |
tctgggtgtgatcaaaatcacnnnnnnnnn-attcaatcaaaatcagacacatacatacatagacactaaactaccttggtttttagcaggcaaaggaaa |
388 |
Q |
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| T |
42800477 |
tctgggtgtgatcaaaatcactttttcttttattcaatcaaaatcagacacatacatacatagacactaaactaccttggtttttagcaggcaaaggaaa |
42800576 |
T |
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| Q |
389 |
agcagaaacaggtatgctttcaaaacaagcattaagtttgtcattaggacttaattgtgcctcttgaacatcccatagatcttcaactctcctcccaagt |
488 |
Q |
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| T |
42800577 |
agcagaaacaggtatgctttcaaaacaagcattaagtttgtcattaggacttaattgtgcctcttgaacatcccatagatcttcaactctcatcccaagt |
42800676 |
T |
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| Q |
489 |
ttggcttcagggctccttggcatctctctcattgtagccattgccatta |
537 |
Q |
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| T |
42800677 |
ttggcttcagggctccttggcatctctctcattgtagccattgccatta |
42800725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 42800188 - 42800303
Alignment:
| Q |
1 |
cacaacaggtgcactcagaatattgtgacgtgctagtattttcacagcttcagccaaggtagcatctgattttatttcaatttctatacaagcaaacata |
100 |
Q |
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| T |
42800188 |
cacaacaggtgcactcagaatattgtgacgtgctagtattttcacagcttcagccaaggtagcatctgattttatttcaatttctatacaagcaaacata |
42800287 |
T |
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| Q |
101 |
aaattcacacttttag |
116 |
Q |
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| T |
42800288 |
aaattcacacttttag |
42800303 |
T |
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