View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_high_32 (Length: 232)
Name: NF18040_high_32
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_high_32 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 27604577 - 27604808
Alignment:
| Q |
1 |
cgtacaaagttaagacctgttgcaagtggtagtttgacgccatttcaaggactttcttttcttggatttcatcttctgttgggtcttggtattcttctac |
100 |
Q |
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| T |
27604577 |
cgtacaaagttaagacctgtggcaagtggtattttgacaccatttcaaggactttcttttcttggatttcaactgcttttgggtcttggtattcttctac |
27604676 |
T |
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| Q |
101 |
aactgaataattataggttagttttaatgttgtctgcaaagatctatggttaatgtcttactgtgttatgttggggctttagactgttaaatttacaata |
200 |
Q |
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| T |
27604677 |
aactgaataattataggttagttttaatgttgtctgcaaagatctatggttaatgtcttactgtgttatgttggggctttagactattaaatttacaata |
27604776 |
T |
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| Q |
201 |
tctcaatcagttataaaacatggtacgtatga |
232 |
Q |
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| T |
27604777 |
tctcaatcagttataaaacatggtacctatga |
27604808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 52209974 - 52209744
Alignment:
| Q |
1 |
cgtacaaagttaagacctgttgcaagtggtagtttgacgccatttcaaggactttcttttcttggatttcatcttctgttgggtcttggtattcttctac |
100 |
Q |
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||||||||||| |||||||| ||||||||| |||||| |||||||||||||||| |||||| |||||||| | | |||||||||||||||||||||| |
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| T |
52209974 |
cgtacaaagttgagacctgtggcaagtggtcttttgacaccatttcaaggacttt-ttttctaggatttcaattgtttttgggtcttggtattcttctac |
52209876 |
T |
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| Q |
101 |
aactgaataattataggttagttttaatgttgtctgcaaagatctatggttaatgtcttactgtgttatgttggggctttagactgttaaatttacaata |
200 |
Q |
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| T |
52209875 |
aactgaataactataggttagtttcaatgttgtctgccaagatatatggttaatgacttactgtgttatgttggggctttagactgttaaattcacatta |
52209776 |
T |
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| Q |
201 |
tctcaatcagttataaaacatggtacgtatga |
232 |
Q |
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| T |
52209775 |
tctcaatcagttataaaacatggtacctatga |
52209744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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