View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_high_34 (Length: 219)
Name: NF18040_high_34
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 28073251 - 28073438
Alignment:
| Q |
18 |
aagatctccagacagacataagacgccatctctacaaatttgttaataaagtatgcattcaagcatttaaaagtatttcatgatatcctctttaggtaga |
117 |
Q |
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| T |
28073251 |
aagatctccagacagacataagacgccatctctacaaatttgttaataaagtatgcattcaagcatttaaaagtatttcatgatatcctctttaggtaga |
28073350 |
T |
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| Q |
118 |
ttttatttatctggttcaatttttatgtgaactttaaaatctcacctataatgcaataaataaaattctattttccctacgtctctgc |
205 |
Q |
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| T |
28073351 |
ttttatttatctggttcaatttttatgtgaactttaaaatctcacctataatgcaataaataaaattctattttccctacgtctctgc |
28073438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 28090190 - 28090349
Alignment:
| Q |
18 |
aagatctccagacagacataagacgccatctctacaaatttgttaataaagtatgcattcaagcatttaaaagtatttcatgatatcctctttaggtaga |
117 |
Q |
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| T |
28090190 |
aagatctccagacagacataagacgccatctcttcaaatttgttaataaagtat--------gcatttaaaaagagttcatgatatactctttaagtcga |
28090281 |
T |
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| Q |
118 |
ttttatttatctggttcaatttttatgtgaactttaaaatctcacctataatgcaataaataaaattc |
185 |
Q |
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| T |
28090282 |
ttttatttatatggttcagatgttatgtggactttaaaatctcacctaaaatgctttaaataaaattc |
28090349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 28033874 - 28033957
Alignment:
| Q |
18 |
aagatctccagacagacataagacgccatctctacaaatttgttaataaagtatgcattcaagcatttaaaagtatttcatgat |
101 |
Q |
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| T |
28033874 |
aagatctccagacagacatacgacgtcatctcttcaaatttgttaaaaatgtatgcattggaacattttaaagaagttcatgat |
28033957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 1438885 - 1439037
Alignment:
| Q |
18 |
aagatctccagacagacataagacgccatctctacaaatttgttaataaagtatgcattcaagcatttaaaagtatttcatgatatcctctttaggtaga |
117 |
Q |
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|||||||||||| |||||| ||||||||||||| ||||||||| || ||||||||||||||||||||||||| || | ||||||| ||||||| ||||| |
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| T |
1438885 |
aagatctccagaaagacattagacgccatctcttcaaatttgtaaaaaaagtatgcattcaagcatttaaaaatagtaaatgatatactctttaagtaga |
1438984 |
T |
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| Q |
118 |
ttttatttatctggttcaatttttatgtgaactttaaaatctcacctataatg |
170 |
Q |
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| T |
1438985 |
ttttatttatctagttcagatgttatgtgaactttaaaatctcacctataatg |
1439037 |
T |
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