View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_high_9 (Length: 459)
Name: NF18040_high_9
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 45236480 - 45236056
Alignment:
| Q |
18 |
aaatgaaatctcatttcaaaggatttgtggtttataataatgaacatgttccatcatcaaattttcatttactcatatattgcactagctgtgtctaaca |
117 |
Q |
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| T |
45236480 |
aaatgaaatctcatttcaaaggatttgtggtttataataatgaacatgttccatcatcaaattttcatttactcatatattgcactagctgtgtctacca |
45236381 |
T |
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| Q |
118 |
attctagtataagcagtctttgagccaaatctacttttaaatgatccaatacattcattattgaagccatgacagaagagataaaaggaacggtgcgcac |
217 |
Q |
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| T |
45236380 |
attctagtataagcagtctttgagccaaatctacttttaaatgatccaatacattcattattgaagccatgacagaagagataaaaggaacggtgcgcac |
45236281 |
T |
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| Q |
218 |
tacacagcctagtaagtaacttgtgatagaagtattctctatttgaagttgaccaattgatgcagattggacaaagtggaggacaatatgatacaaaatg |
317 |
Q |
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| T |
45236280 |
tacacagcctagtaaataacttgtgatagaagtattctctatttgaagttgaccaattgatgcagattggacaaagtggaggacaatatgatacaaaatg |
45236181 |
T |
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| Q |
318 |
ccaattcatttgacccttagtctcattatattgatggagccccacttttcaaccttatgcatgcattctctttgatgtttgaagtcctattcannnnnnn |
417 |
Q |
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| T |
45236180 |
ccaattcatttgacccttagtctcattatattgatggagccccacttttcaaccttatgcatgcattctctttgatgtttgaagtcctattca--ttttt |
45236083 |
T |
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| Q |
418 |
atgagagggtctcttctattcacctat |
444 |
Q |
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| T |
45236082 |
atgagagggtctcttctattcacctat |
45236056 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 320
Target Start/End: Complemental strand, 783584 - 783527
Alignment:
| Q |
263 |
aagttgaccaattgatgcagattggacaaagtggaggacaatatgatacaaaatgcca |
320 |
Q |
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| T |
783584 |
aagttgaccaattgatgctgagtgaactaagtggaggacaaaatgatacaaaatgcca |
783527 |
T |
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