View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18040_low_1 (Length: 726)

Name: NF18040_low_1
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18040_low_1
NF18040_low_1
[»] chr1 (5 HSPs)
chr1 (285-710)||(47052842-47053283)
chr1 (19-262)||(47053283-47053522)
chr1 (362-407)||(47061641-47061686)
chr1 (38-106)||(30557534-30557601)
chr1 (42-101)||(48549004-48549062)
[»] chr8 (3 HSPs)
chr8 (104-153)||(44141111-44141160)
chr8 (38-153)||(32927867-32927991)
chr8 (104-153)||(37684380-37684429)
[»] chr4 (7 HSPs)
chr4 (38-153)||(32818356-32818480)
chr4 (104-153)||(50061689-50061738)
chr4 (39-100)||(16551993-16552053)
chr4 (104-153)||(46344893-46344941)
chr4 (104-148)||(25927288-25927332)
chr4 (120-153)||(38498238-38498271)
chr4 (38-83)||(45694669-45694713)
[»] chr7 (2 HSPs)
chr7 (38-106)||(40491608-40491677)
chr7 (120-153)||(23441307-23441340)
[»] chr6 (2 HSPs)
chr6 (104-148)||(5724691-5724735)
chr6 (23-106)||(947597-947679)
[»] chr5 (3 HSPs)
chr5 (38-106)||(18637314-18637382)
chr5 (38-106)||(38845473-38845543)
chr5 (104-145)||(9818717-9818758)
[»] chr3 (1 HSPs)
chr3 (38-71)||(35058124-35058157)
[»] chr2 (1 HSPs)
chr2 (56-101)||(15928461-15928506)


Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 285 - 710
Target Start/End: Complemental strand, 47053283 - 47052842
Alignment:
Q  285 tgagagtaaccataatggtttagcataatcactgacgtagggttgatgaaaatgaaag------------------agagcgttatgttacgtacgaatc 366  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||    
T  47053283 tgagagtaaccataatggcttagcataatcactgacgtagggttgatgaaaatgaaagtgaagaataaaatgaaagagagcgttatgttacgtacgaatc 47053184  T
Q  367 aggggcgcagatttggagattgtatagatttgtgtcaaggagagctttaaccaaagctctgaggccaggtgcatcgattccatcatcgtttgtgatcatg 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47053183 aggggcgcagatttggagattgtatagatttgtgtcaaggagagctttaaccaaagctctgaggccaggtgcatcgattccatcatcgtttgtgatcatg 47053084  T
Q  467 atcgttcctctgttattcttaccttcctccattttgcttgaatgcgaattaccctttcgatgaatgaatgaatgaatgactagactagatagagagacaa 566  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    ||||||||||||| |||||||||||    
T  47053083 atcgttcctctgttattcttaccttcctccattttgcttgaatacgaattaccctttcgatgaatgaatga----atgactagactagctagagagacaa 47052988  T
Q  567 agattgggagttagttaggaattgaaaattgaaatatactactgtacgaatatggcgctatgtctttaagctaatattcccttccaccaattaattaatt 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47052987 agattgggagttagttaggaattgaaaattgaaatatactactgtacgaatatggcgttatgtctttaagctaatattcccttccaccaattaattaatt 47052888  T
Q  667 tcttt--cacttcactgcttcaataataatctacaaaattacctat 710  Q
    |||||  |||||||||||||||||||||||||||||||||||||||    
T  47052887 tctttcacacttcactgcttcaataataatctacaaaattacctat 47052842  T

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Target: chr1; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 47053522 - 47053283
Alignment:
Q  19 aagtgattggtgtttggaatttggatacattcatgtaaaaagtgagttaaactataaatgagtgtaaaattcaattctagaataaaaatcctaacttcaa 118  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47053522 aagtgattggtgtttggaatttggatacattcatgtaaaa-gtgagttaaactataaatgagtgtaaaattcaattctagaataaaaatcctaacttcaa 47053424  T
Q  119 atagaat----caattatggaggcaaaatcaattatactnnnnnnncaacagaataaattgtacatatccggaatcaattttggtctatttaaaagcgga 214  Q
    |||||||    ||||| ||||||||||||||||| ||||        || | ||  ||||||||||||||||||||||||||||||||||||||||||||    
T  47053423 atagaatcaatcaattctggaggcaaaatcaattctacta-------aaaaaaaataattgtacatatccggaatcaattttggtctatttaaaagcgga 47053331  T
Q  215 accaaacataaacatacacttaattaactgattctcgtaaaatagggt 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47053330 accaaacataaacatacacttaattaactgattctcgtaaaatagggt 47053283  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 47061686 - 47061641
Alignment:
Q  362 gaatcaggggcgcagatttggagattgtatagatttgtgtcaagga 407  Q
    |||||||||||||||| |||||||||||||||||| ||| ||||||    
T  47061686 gaatcaggggcgcagacttggagattgtatagattggtggcaagga 47061641  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 30557601 - 30557534
Alignment:
Q  38 tttggatacattcatgtaaaaagtgagttaaactataaatgagtgtaaaattcaattctagaataaaaa 106  Q
    ||||||||||||||| ||||| ||||||| ||||||||||  |||| ||| ||||||||||||| ||||    
T  30557601 tttggatacattcatataaaa-gtgagttgaactataaatttgtgtgaaaatcaattctagaatcaaaa 30557534  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 48549004 - 48549062
Alignment:
Q  42 gatacattcatgtaaaaagtgagttaaactataaatgagtgtaaaattcaattctagaat 101  Q
    |||||||| |||||||| ||||||| ||| |||||||||| ||||| |||||||||||||    
T  48549004 gatacatttatgtaaaa-gtgagttgaacaataaatgagtttaaaaatcaattctagaat 48549062  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 44141111 - 44141160
Alignment:
Q  104 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaattatact 153  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  44141111 aaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 44141160  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 153
Target Start/End: Complemental strand, 32927991 - 32927867
Alignment:
Q  38 tttggatacattcatgtaaaaagtgagttaaactataaat--gagtgtaaaattcaattctagaataaaaa--------tcctaacttcaaatagaatca 127  Q
    ||||||||||||||||||||| ||||||| ||||||||||  | |||||||| | ||||||| ||| ||||        ||||| |||||| ||||||||    
T  32927991 tttggatacattcatgtaaaa-gtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagtagaatca 32927893  T
Q  128 attatggaggcaaaatcaattatact 153  Q
    | ||| ||||||||||||||| ||||    
T  32927892 actattgaggcaaaatcaattctact 32927867  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 37684429 - 37684380
Alignment:
Q  104 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaattatact 153  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||| ||||    
T  37684429 aaatcctaacttcaagtagaatcaattctggagacaaaatcaattctact 37684380  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 32818356 - 32818480
Alignment:
Q  38 tttggatacattcatgtaaaaagtgagttaaactataaatgagtgt--aaaattcaattctagaataaaaatc--------ctaacttcaaatagaatca 127  Q
    ||||||||||||||||||||| || |||| ||||||||||  ||||  |||| ||||||||||||| |||| |        ||| |||||||||||||||    
T  32818356 tttggatacattcatgtaaaa-gttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaatca 32818454  T
Q  128 attatggaggcaaaatcaattatact 153  Q
    ||| ||||||||||||||||| ||||    
T  32818455 attctggaggcaaaatcaattctact 32818480  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 50061689 - 50061738
Alignment:
Q  104 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaattatact 153  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  50061689 aaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 50061738  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 16552053 - 16551993
Alignment:
Q  39 ttggatacattcatgtaaaaagtgagttaaactataaatgagtgtaaaattcaattctagaa 100  Q
    |||||||||||||||||||| ||||||| ||||||||||  |||| ||| ||||||||||||    
T  16552053 ttggatacattcatgtaaaa-gtgagttgaactataaatttgtgtgaaaatcaattctagaa 16551993  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 46344893 - 46344941
Alignment:
Q  104 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaattatact 153  Q
    |||| |||||||||| |||||| |||||||||||||||||||||||||||    
T  46344893 aaattctaacttcaagtagaat-aattatggaggcaaaatcaattatact 46344941  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 25927332 - 25927288
Alignment:
Q  104 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaatt 148  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||    
T  25927332 aaatcttaactccaaatagaatcaattatggaggcataatcaatt 25927288  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 38498271 - 38498238
Alignment:
Q  120 tagaatcaattatggaggcaaaatcaattatact 153  Q
    |||||||||||||||||||||||| |||||||||    
T  38498271 tagaatcaattatggaggcaaaataaattatact 38498238  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 45694713 - 45694669
Alignment:
Q  38 tttggatacattcatgtaaaaagtgagttaaactataaatgagtgt 83  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||    
T  45694713 tttggatacattcatgtaaaaa-tgagttcaactataaatgtgtgt 45694669  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 40491677 - 40491608
Alignment:
Q  38 tttggatacattcatgtaaaaagtgagttaaactataaa--tgagtgtaaaattcaattctagaataaaaa 106  Q
    ||||||||||||||||| |||||||||||||||| ||||  || |||||||| ||||||||||||| ||||    
T  40491677 tttggatacattcatgt-aaaagtgagttaaactttaaatttgtgtgtaaaagtcaattctagaatcaaaa 40491608  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 23441307 - 23441340
Alignment:
Q  120 tagaatcaattatggaggcaaaatcaattatact 153  Q
    ||||||||||||||||||||||||||||| ||||    
T  23441307 tagaatcaattatggaggcaaaatcaattgtact 23441340  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 5724691 - 5724735
Alignment:
Q  104 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaatt 148  Q
    |||||||| |||||| ||||||||||| |||||||||||||||||    
T  5724691 aaatcctagcttcaagtagaatcaattttggaggcaaaatcaatt 5724735  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 947679 - 947597
Alignment:
Q  23 gattggtgtttggaatttggatacattcatgtaaaaagtgagttaaactataaatgagtgtaaaattcaattctagaataaaaa 106  Q
    |||| ||||||||| || |||||||||||||| ||||||||||| || ||||| || || ||| | ||||||||||||| ||||    
T  947679 gatttgtgtttggacttaggatacattcatgt-aaaagtgagttgaattataattgtgtttaagaatcaattctagaatcaaaa 947597  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 18637382 - 18637314
Alignment:
Q  38 tttggatacattcatgtaaaaagtgagttaaactataaatgagtgtaaaattcaattctagaataaaaa 106  Q
    |||||||| |||| | | |||| |||||| ||||||||||| |||||||| ||||||||||||| ||||    
T  18637382 tttggatagattctttttaaaattgagttgaactataaatgtgtgtaaaaatcaattctagaatcaaaa 18637314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 38845543 - 38845473
Alignment:
Q  38 tttggatacattcatgtaaaaagtgagttaaactataaa--tgagtgtaaaattcaattctagaataaaaa 106  Q
    |||||||| |||||||||||||||||||| ||||||| |  || |||| ||| ||||||||||||| ||||    
T  38845543 tttggatatattcatgtaaaaagtgagtttaactatatatttgtgtgtgaaaatcaattctagaatcaaaa 38845473  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 9818758 - 9818717
Alignment:
Q  104 aaatcctaacttcaaatagaatcaattatggaggcaaaatca 145  Q
    ||||| || |||||| ||||||||||||||||||||||||||    
T  9818758 aaatcatagcttcaagtagaatcaattatggaggcaaaatca 9818717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 35058157 - 35058124
Alignment:
Q  38 tttggatacattcatgtaaaaagtgagttaaact 71  Q
    ||||||||||||||||||||||||||||| ||||    
T  35058157 tttggatacattcatgtaaaaagtgagttgaact 35058124  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 15928461 - 15928506
Alignment:
Q  56 aaaagtgagttaaactataaatgagtgtaaaattcaattctagaat 101  Q
    |||||||||||||||| |||||| |||||| | |||||||||||||    
T  15928461 aaaagtgagttaaactttaaatgtgtgtaagaatcaattctagaat 15928506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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