View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18040_low_11 (Length: 431)
Name: NF18040_low_11
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 54252681 - 54253099
Alignment:
| Q |
1 |
atcatcacaagttgatggtattaaagtgaaggagggtgtgaaaatgaaaagatgagaaaagaagggtggtgcatgtttgtttgtattggagttgaatgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
54252681 |
atcatcacaagttgatggtattaaagtgaaggagggtgtgaaaatgaaaagatgagaaaagaaggggggtgcatgtttgtttgtattggagttgaatgga |
54252780 |
T |
|
| Q |
101 |
tgaatgaaactaagaagaattgtcgtaagagaagaaggcaagaaatgtggatgtattgaaaagggtgtttgttttttcaagaagcttactgcaactctct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54252781 |
tgaatgaaactaagaagaattgtcgtaagagaagaaggcaagaaatgtggatgtattgaaaagggtgtttgttttttcaagaagcttactgcaactctct |
54252880 |
T |
|
| Q |
201 |
gcacaatggctgtcccactttgattgtctgtccaaacataatgtttatataatgtaatgtaatgtggtcttggttgctagctagtaataataatttaatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54252881 |
gcacaatggctgtcccactttgattgcctgtccaaacataatgtt--tataatgtaatgtaatgtggtcttggttgctagctagtaataataatttaatg |
54252978 |
T |
|
| Q |
301 |
taaagaagaaaataaattgagaaaaaatgaatggttggtgaatgcttttttgtgtgtgtactgtacggtttagggtatgtatggcattgggaagtttatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54252979 |
taaagaagaaaataaattgagaaaaaatgaatggttggtgaatgcttttttgtgtgtgtactgtacggtttagggtatgtatggcattgggaagtttatt |
54253078 |
T |
|
| Q |
401 |
taattccttctactacctttg |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
54253079 |
taattccttctactacctttg |
54253099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University