View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_low_12 (Length: 405)
Name: NF18040_low_12
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 25 - 323
Target Start/End: Complemental strand, 42093537 - 42093238
Alignment:
| Q |
25 |
ggttcttctatttgttaaacacggttttgagttgagaaatgtactcttttggttagttgtacttttaagcacttaagtgatttgatgattaagtaatcaa |
124 |
Q |
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| T |
42093537 |
ggttcttctatttgttaaacacggttttgagttgagaaatgtactgttttggttagttgtacttttaagcacttaagtgatttgatgattaagtaatcaa |
42093438 |
T |
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| Q |
125 |
caaattgtgagatgtccttttattagttgccttatgtacttt-ctgctacaaagttggttgggtattaaggaaaaatgatcattatctttggcagaagta |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
42093437 |
caaattgtgagatgtccttttattagttgccttatgtacttttctgctaccaagttggttgggtattaaggaaaaattatcattatctttggtagaagta |
42093338 |
T |
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| Q |
224 |
gtctttgatgtgctatctatttgttacttcttatgctatcaattttgagttcctgcatctgagttcaattctcataattatgagatttggaatatcattt |
323 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42093337 |
gtctttgatatgctatctatttgttacttcttatgctatcaattttgagttcctgcatctgagttcatttctcataattatgagatttggaatatcattt |
42093238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 52 - 322
Target Start/End: Complemental strand, 29707418 - 29707150
Alignment:
| Q |
52 |
tgagttgagaaatgtactcttttggttagttgtacttttaagcacttaagtgatttgatgattaagtaatcaacaaattgtgagatgtccttttattagt |
151 |
Q |
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|||||||||||||||||||| |||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
29707418 |
tgagttgagaaatgtactctattggttgtgtgtactttttagcactttagtgatttgatgattaagtaatcaacaaattgtgagatgtactcttattagt |
29707319 |
T |
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| Q |
152 |
tgccttatgtactttctgctacaaagttggttgggtattaaggaaaaatgatcattatctttggcagaag--tagtctttgatgtgctatctatttgtta |
249 |
Q |
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| T |
29707318 |
tgccttatgtactttctgctaccaa----gttgggtattaaggaaaaattatcattatctttggtataagtatagtcttcgatatgttatctatttgtta |
29707223 |
T |
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| Q |
250 |
cttcttatgctatcaattttgagttcctgcatctgagttcaattctcataattatgagatttggaatatcatt |
322 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
29707222 |
cttcatatgctatcaattttgagttcctgcatctgaattcaattctcataattatgagatttgaaatatcatt |
29707150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 42092569 - 42092511
Alignment:
| Q |
342 |
atcagttgcttgaagattaaataatcattagattatgaggtttacttttctgtgctgct |
400 |
Q |
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| T |
42092569 |
atcagttgcttgaagattaaataatcattagattatgaggtttacttttctgtgttgct |
42092511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 52 - 318
Target Start/End: Complemental strand, 27509966 - 27509704
Alignment:
| Q |
52 |
tgagttgagaaatgtactcttttggttagttgtacttttaagcacttaagtgatttgatgattaagtaatcaacaaattgtgagatgtccttttattagt |
151 |
Q |
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||||||||||||||||||||||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||||| || |||||| | |
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| T |
27509966 |
tgagttgagaaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatgtactcttattatt |
27509867 |
T |
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| Q |
152 |
tgccttatgtactttctgctacaaagttggttgggtattaaggaaaaatgatcattatctttggcagaagtagtctttgatgtgctatctatttgttact |
251 |
Q |
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|||||| ||||||||||||||| ||||||| |||||||||||| | |||||||||||||| | ||||||||||||| |||| ||||||||||||| |
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| T |
27509866 |
tgccttgtgtactttctgctacgaagttgg----gtattaaggaaatactatcattatctttggtatgagtagtctttgatatgctttctatttgttact |
27509771 |
T |
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| Q |
252 |
tcttatgctatcaattttgagttcctgcatctgagttcaattctcataattatgagatttggaatat |
318 |
Q |
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|| ||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
27509770 |
tcatatgctatcaattttgagttcatgcatatgagttaaattctcataattatgagatttggaatat |
27509704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 52 - 322
Target Start/End: Original strand, 27271438 - 27271707
Alignment:
| Q |
52 |
tgagttgagaaatgtactcttttggttagttgtacttttaagcacttaagtgatttgatgattaagtaatcaacaaattgtgagatgtccttttattagt |
151 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
27271438 |
tgagttgagaaatgtactctattggttgtgtgtactttttagcactttagtgatttgatgattaagtaatcaacaaattgtgagatgtactcttattagt |
27271537 |
T |
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| Q |
152 |
tgccttatgtactttctgctacaaagttggttgggtattaaggaaaaatgatcattatctttggcagaag--tagtctttgatgtgctatcta-tttgtt |
248 |
Q |
| |
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|||||||||||||||||||| | || ||| || ||||||||||||| |||||||||||||| | ||| ||||||| ||| || |||| | |||||| |
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| T |
27271538 |
tgccttatgtactttctgctgccaa----gttcggcattaaggaaaaattatcattatctttggtataagtatagtcttcgatatgttatccattttgtt |
27271633 |
T |
|
| Q |
249 |
acttcttatgctatcaattttgagttcctgcatctgagttcaattctcataattatgagatttggaatatcatt |
322 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| |
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| T |
27271634 |
acttcatatgctatcaattttgagttcctgcatctgaattcaattctcataattatgacatttgaaatatcatt |
27271707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 52 - 318
Target Start/End: Original strand, 39210970 - 39211235
Alignment:
| Q |
52 |
tgagttgagaaatgtactcttttggttagttgtacttttaagcacttaagtgatttgatgattaagtaatcaacaaattgtgagatgtccttttattagt |
151 |
Q |
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||||||||||||||||||||||||||| ||||||||| | ||||| |||||||||||||| ||||||| ||||||||||||||||| || |||||| | |
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| T |
39210970 |
tgagttgagaaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaattaacaaattgtgagatgtactcttattatt |
39211069 |
T |
|
| Q |
152 |
tgccttatgtactttctgctacaaagttggttgggtattaaggaaaaatgatcattatctttggcagaag--tagtctttgatgtgctatctatttgtta |
249 |
Q |
| |
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|||||| ||||||||||||||| || |||||||||| |||||| || |||||||||||||| | || ||||||||||| |||||||||||||||| |
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| T |
39211070 |
tgccttgtgtactttctgctaccaa----gttgggtattgaggaaatattatcattatctttggtatgagtatagtctttgatatgctatctatttgtta |
39211165 |
T |
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| Q |
250 |
cttcttatgctatcaa-ttttgagttcctgcatctgagttcaattctcataattatgagatttggaatat |
318 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
39211166 |
cttcatatgctatcaatttttgagttcctgcatctgagatcaattcttataattatgagatttggaatat |
39211235 |
T |
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