View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_low_16 (Length: 335)
Name: NF18040_low_16
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 33040185 - 33039863
Alignment:
| Q |
1 |
acaatacaaagcacattagtcttaccgctcgaaatacaagccatcatgaatgcaatcaattaagtggaaaaccagttcttctactannnnnnnctgtgct |
100 |
Q |
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| T |
33040185 |
acaatacaaagcacattagtcttaccactcgaaatacaagccatcatgaatgcaatcaattaagtggaaaaccagttcttctactatttttttctgtgct |
33040086 |
T |
|
| Q |
101 |
atcaaccatatttgtactgcaacaaaattctcacaaatgcttttggtaaacacaaagcaagtttaatatggagatatactatcaggaatgagtgatttta |
200 |
Q |
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| T |
33040085 |
atcaaccatatttgtactgcaacaaaattctcacaaatgcttttggtaaacacaaagccagtttaatatggagatatactatcaggaatgagtgatttta |
33039986 |
T |
|
| Q |
201 |
agaaattaacgacaatcttagtcaacaccttaatgtcacattacaaagtgaactaggaatgagatatttattatcaattgttatgaaaaaattcatcatg |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33039985 |
agaaattaacgacgatcttagtcaacaccttaatgtcacattacaaagtgaactaggaatgagatatttattatcaattgttacgaaaaaattcatcatg |
33039886 |
T |
|
| Q |
301 |
atattgatacccaactggctctg |
323 |
Q |
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||||||||||||||||||||||| |
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| T |
33039885 |
atattgatacccaactggctctg |
33039863 |
T |
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