View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_low_17 (Length: 309)
Name: NF18040_low_17
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_low_17 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 43878914 - 43879189
Alignment:
| Q |
18 |
gaaattagcatgaatgtgtcaagagaacaaacaatggaagatgctgcaagtattgnnnnnnnncatgtgagttttgtgaaacaaattagtccagaaaatg |
117 |
Q |
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| T |
43878914 |
gaaattagcatgaatgtgtcaagagaaaaaacaatggaagatgctgcaagtattgaaaaaaaacatgtgagttttgtgaaacaaattagtccagaaaatg |
43879013 |
T |
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| Q |
118 |
gagtgaaagagaaaaaagacaaagggaataagaagaatgattcatgtgttaatgaattggcattgaagatgaaggaattggagatgaatgattcaggtga |
217 |
Q |
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| T |
43879014 |
gagtgaaagagaaaaaagacaaagggaataagaagaatgattcatgtgttaatgaattggcattgaagatgaaggaattggagatgaatgattcaggtga |
43879113 |
T |
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| Q |
218 |
tgttgaacaagtactagatatagaagaagcacttcactattattctcgtctcaagagtcctatttatttagatatt |
293 |
Q |
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| T |
43879114 |
tgttgaacaagtactagatatagaagaagcacttcactattattctcgtctcaagagtcctatttatttagatatt |
43879189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 182 - 293
Target Start/End: Complemental strand, 7701 - 7590
Alignment:
| Q |
182 |
gaagatgaaggaattggagatgaatgattcaggtgatgttgaacaagtactagatatagaagaagcacttcactattattctcgtctcaagagtcctatt |
281 |
Q |
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| T |
7701 |
gaagatgaaggaattagatatgatggattcaggtgatcttgaacacgtactagacatcgaagaagcacttcactactattctcgccttaaaagtccggtt |
7602 |
T |
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| Q |
282 |
tatttagatatt |
293 |
Q |
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| T |
7601 |
tatctagatatt |
7590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 13285 - 13202
Alignment:
| Q |
182 |
gaagatgaaggaattggagatgaatgattcaggtgatgttgaacaagtactagatatagaagaagcacttcactattattctcg |
265 |
Q |
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| T |
13285 |
gaagatgaagaaaatggatatgatggaatcaggtgatcttgaacatgtgctagacatagaagaagcacttcactactattctcg |
13202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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