View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18040_low_19 (Length: 304)

Name: NF18040_low_19
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18040_low_19
NF18040_low_19
[»] chr4 (12 HSPs)
chr4 (4-286)||(25793024-25793310)
chr4 (147-243)||(2996568-2996664)
chr4 (152-213)||(52259631-52259692)
chr4 (199-243)||(21043214-21043258)
chr4 (150-232)||(54426041-54426124)
chr4 (152-237)||(17822849-17822935)
chr4 (162-243)||(27123331-27123412)
chr4 (153-233)||(40831018-40831098)
chr4 (147-204)||(49202640-49202697)
chr4 (147-232)||(50800020-50800104)
chr4 (152-232)||(55414409-55414490)
chr4 (193-233)||(35726740-35726780)
[»] chr3 (18 HSPs)
chr3 (21-119)||(10101874-10101972)
chr3 (21-119)||(10133715-10133813)
chr3 (21-101)||(10212816-10212896)
chr3 (152-238)||(39980729-39980816)
chr3 (147-244)||(1217778-1217875)
chr3 (159-243)||(37273141-37273225)
chr3 (152-235)||(53789447-53789531)
chr3 (58-119)||(10074981-10075042)
chr3 (45-94)||(10136332-10136381)
chr3 (147-244)||(39602188-39602285)
chr3 (193-237)||(30923883-30923927)
chr3 (152-238)||(21367667-21367754)
chr3 (147-238)||(34382937-34383028)
chr3 (193-232)||(48300472-48300511)
chr3 (158-212)||(901930-901984)
chr3 (161-238)||(45541580-45541657)
chr3 (186-238)||(5391913-5391965)
chr3 (152-212)||(47132331-47132391)
[»] chr8 (14 HSPs)
chr8 (149-243)||(26473731-26473825)
chr8 (167-227)||(42597453-42597513)
chr8 (147-269)||(11415149-11415271)
chr8 (147-243)||(6509282-6509378)
chr8 (186-238)||(31875579-31875631)
chr8 (152-243)||(11569436-11569527)
chr8 (152-238)||(39551193-39551279)
chr8 (147-204)||(9956832-9956889)
chr8 (202-243)||(26499766-26499807)
chr8 (152-213)||(43504751-43504812)
chr8 (159-227)||(20672757-20672825)
chr8 (152-212)||(27028831-27028891)
chr8 (159-243)||(30259121-30259205)
chr8 (147-203)||(37461137-37461193)
[»] chr6 (10 HSPs)
chr6 (149-238)||(20368164-20368253)
chr6 (161-280)||(2455819-2455938)
chr6 (147-238)||(31624085-31624176)
chr6 (147-243)||(7148661-7148757)
chr6 (152-235)||(4246410-4246493)
chr6 (162-243)||(2460130-2460211)
chr6 (147-180)||(33828641-33828674)
chr6 (152-212)||(6536615-6536675)
chr6 (167-243)||(8420176-8420252)
chr6 (159-243)||(32171362-32171446)
[»] chr5 (10 HSPs)
chr5 (147-244)||(41957429-41957526)
chr5 (169-238)||(31688056-31688125)
chr5 (147-243)||(32172648-32172744)
chr5 (147-238)||(2568653-2568744)
chr5 (152-230)||(32703268-32703346)
chr5 (155-209)||(37954689-37954743)
chr5 (147-232)||(6587097-6587182)
chr5 (147-180)||(34245719-34245752)
chr5 (193-237)||(4273362-4273406)
chr5 (159-238)||(39105471-39105551)
[»] chr1 (25 HSPs)
chr1 (147-243)||(15515536-15515632)
chr1 (152-243)||(27140478-27140569)
chr1 (147-226)||(7218070-7218149)
chr1 (147-234)||(28689440-28689529)
chr1 (152-226)||(31294517-31294591)
chr1 (150-238)||(49938745-49938834)
chr1 (147-243)||(39270404-39270500)
chr1 (186-237)||(11695895-11695946)
chr1 (150-212)||(1510320-1510382)
chr1 (199-280)||(15581301-15581382)
chr1 (199-244)||(27145968-27146013)
chr1 (159-212)||(27820347-27820400)
chr1 (166-243)||(32515420-32515497)
chr1 (147-212)||(35179134-35179199)
chr1 (154-211)||(39603842-39603899)
chr1 (161-238)||(43338125-43338202)
chr1 (147-212)||(51695505-51695570)
chr1 (152-212)||(473164-473224)
chr1 (152-204)||(3234033-3234085)
chr1 (152-228)||(12564493-12564569)
chr1 (147-211)||(25944427-25944491)
chr1 (152-204)||(26779943-26779995)
chr1 (156-204)||(29270299-29270347)
chr1 (166-238)||(35925704-35925776)
chr1 (152-212)||(42174855-42174915)
[»] chr2 (17 HSPs)
chr2 (147-281)||(11513893-11514025)
chr2 (147-235)||(10563545-10563633)
chr2 (152-238)||(43279512-43279599)
chr2 (152-245)||(41851141-41851234)
chr2 (147-238)||(18066123-18066215)
chr2 (152-212)||(26202028-26202088)
chr2 (147-223)||(39983337-39983413)
chr2 (150-212)||(12289795-12289857)
chr2 (147-232)||(34102013-34102098)
chr2 (161-238)||(34652020-34652097)
chr2 (147-243)||(1742011-1742107)
chr2 (147-175)||(7751488-7751516)
chr2 (147-203)||(9477947-9478003)
chr2 (201-237)||(15377815-15377851)
chr2 (152-204)||(20952355-20952407)
chr2 (186-238)||(32106783-32106835)
chr2 (152-212)||(32592586-32592646)
[»] scaffold0045 (1 HSPs)
scaffold0045 (63-120)||(84690-84747)
[»] chr7 (9 HSPs)
chr7 (193-238)||(29768623-29768668)
chr7 (152-202)||(19022605-19022655)
chr7 (147-204)||(44821954-44822011)
chr7 (161-226)||(45078287-45078352)
chr7 (147-204)||(45790443-45790500)
chr7 (151-204)||(47130803-47130856)
chr7 (147-175)||(32210262-32210290)
chr7 (194-262)||(44686972-44687040)
chr7 (152-212)||(48470044-48470104)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 4 - 286
Target Start/End: Complemental strand, 25793310 - 25793024
Alignment:
Q  4 ccctaaaatgatcaagaatatatatccagtcaaatatatgaaggcttgttcatgacatgaataagtttattaatatgaaaatagctatattgtttcacta 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25793310 ccctaaaatgatcaagaatatatatccagtcaaatatatgaaggcttgttcatgacatgaataagtttattaatatgacaatagctatattgtttcacta 25793211  T
Q  104 ctacttaccagaaaaccccctaaagaaaaagtataatcgtcactaagttataagttgtttttataagctatcatgga----taacctatgaacataagtt 199  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  25793210 ctacttaccagaaaaccccctaaagaaaaagtataatcgtcattaagttataagttgtttttataagctatcatggatatctaacctatgaacataagtt 25793111  T
Q  200 gaaaatagcttatagacgtgtcataagctgtttccataacctctttaaagcaatctaacaaattcttatgcccgtagataataatct 286  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25793110 gaaaatagcttatggacgtgtcataacctgtttccataacctctttaaagcaatctaacaaattcttatgcccgtagataataatct 25793024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 2996568 - 2996664
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    |||||||||||||||||| |||||||||| |||| | | |||||| |||||||||||| ||||||| ||| ||||||||| ||||| ||||| ||||    
T  2996568 taagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctct 2996664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 52259631 - 52259692
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttata 213  Q
    |||||| |||||||||||||||||  ||| | | |||||| |||||||||||||||||||||    
T  52259631 tataagctgtttttataagctatctgggagagcttatgaaaataagttgaaaatagcttata 52259692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 21043258 - 21043214
Alignment:
Q  199 tgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    |||||| |||||||  |||||||||||||||||||||||||||||    
T  21043258 tgaaaacagcttatgaacgtgtcataagctgtttccataacctct 21043214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 54426041 - 54426124
Alignment:
Q  150 gttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat-agacgtgtcataagctgttt 232  Q
    |||||||||||||||||||| ||||  |||| ||| |||||| |||| ||||||| ||||||| | |  |||||||||||||||    
T  54426041 gttataagttgtttttataatctatattggagaacttatgaaaataacttgaaaaaagcttatgaaaattgtcataagctgttt 54426124  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 17822935 - 17822849
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat-agacgtgtcataagctgtttccata 237  Q
    ||||||||||||| |||||||||| |||| ||| |||||| ||||| | |||| ||||||| | |  ||||||||||||||| ||||    
T  17822935 tataagttgttttcataagctatcttggagaacttatgaaaataagctaaaaaaagcttatgaaaaatgtcataagctgttttcata 17822849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 27123412 - 27123331
Alignment:
Q  162 ttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    |||| |||||||| ||||| | | |||| | |||||||||||| | |||| |||| ||||||||| ||||||||||| ||||    
T  27123412 ttttgtaagctattatggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctct 27123331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 40831098 - 40831018
Alignment:
Q  153 ataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacg-tgtcataagctgtttc 233  Q
    |||||||||||||||||||||   |||| ||| |||||| |||||||||||| |||||||| | | |||| |||||||||||    
T  40831098 ataagttgtttttataagctagattggagaacttatgaa-ataagttgaaaaaagcttataaaagttgtcgtaagctgtttc 40831018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 49202640 - 49202697
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaa 204  Q
    |||| |||||||||||||  ||||||||| ||||||||  ||||| ||||||||||||    
T  49202640 taagctataagttgttttcgtaagctatcttggataactaatgaaaataagttgaaaa 49202697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 50800104 - 50800020
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgttt 232  Q
    |||| |||||| ||||||  |||||||||||||| ||| |  ||| ||||| |||||| ||||||||||| ||||||||| |||||    
T  50800104 taagctataagctgttttcttaagctatcatggagaactttggaa-ataagctgaaaacagcttatagacatgtcataagttgttt 50800020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 55414490 - 55414409
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat-agacgtgtcataagctgttt 232  Q
    ||||| ||||||| ||||| |||| |||| ||| |||||| |||||||||||| ||||||| | |  |||||||||||||||    
T  55414490 tataaattgttttcataagttatcttggagaacttatgaaaataagttgaaaaaagcttatgaaaaatgtcataagctgttt 55414409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 35726780 - 35726740
Alignment:
Q  193 ataagttgaaaatagcttatagacgtgtcataagctgtttc 233  Q
    |||||||||||||||||||| ||| ||||||||||| ||||    
T  35726780 ataagttgaaaatagcttatggacatgtcataagctctttc 35726740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 10101972 - 10101874
Alignment:
Q  21 atatatatccagtcaaatatatgaaggcttgttcatgacatgaataagtttattaatatgaaaatagctatattgtttcactactacttaccagaaaac 119  Q
    ||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||| | ||||| |||| |||||| | |||||| ||||||||    
T  10101972 atatatatttagtcaaatatatgtaggcttattcatgacatgaataagtttattaatatgacactagctctattatttcaccaatacttatcagaaaac 10101874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 10133813 - 10133715
Alignment:
Q  21 atatatatccagtcaaatatatgaaggcttgttcatgacatgaataagtttattaatatgaaaatagctatattgtttcactactacttaccagaaaac 119  Q
    ||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||| | ||||| |||| |||||| | |||||| ||||||||    
T  10133813 atatatatttagtcaaatatatgtaggcttattcatgacatgaataagtttattaatatgacactagctctattatttcaccaatacttatcagaaaac 10133715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 10212896 - 10212816
Alignment:
Q  21 atatatatccagtcaaatatatgaaggcttgttcatgacatgaataagtttattaatatgaaaatagctatattgtttcac 101  Q
    ||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||| | ||||| |||| ||||||    
T  10212896 atatatatttagtcaaatatatgtaggcttattcatgacatgaataagtttattaatatgacactagctctattatttcac 10212816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 39980729 - 39980816
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat-agacgtgtcataagctgtttccataa 238  Q
    |||||||||||||||||||||||  |||| ||| |||||| |||||||||||| ||||||| | ||  |||||||||||||| |||||    
T  39980729 tataagttgtttttataagctatattggagaacttatgaaaataagttgaaaaaagcttatgaaaccagtcataagctgttttcataa 39980816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 1217875 - 1217778
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctctt 244  Q
    ||||||||||| |||||| |||||||||| | || ||| ||||||  |||| |||||| | ||||| ||| ||||||||||||||||| ||| |||||    
T  1217875 taagttataagctgttttcataagctatccttgagaacttatgaaagtaagatgaaaacaacttatggacatgtcataagctgtttccgtaagctctt 1217778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 37273141 - 37273225
Alignment:
Q  159 tgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    |||||| |||||||||| |||| ||| |||| | |||||||||||| | ||||| ||| ||||||||| ||||||||||| ||||    
T  37273141 tgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctct 37273225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 53789531 - 53789447
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat-agacgtgtcataagctgtttcca 235  Q
    ||||||||||| | ||||||||||||||| ||| ||||||  |||| |||||| ||||||| | | |||||||||||||||||||    
T  53789531 tataagttgttatcataagctatcatggagaacttatgaaattaagctgaaaaaagcttatgaaaagtgtcataagctgtttcca 53789447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 10075042 - 10074981
Alignment:
Q  58 acatgaataagtttattaatatgaaaatagctatattgtttcactactacttaccagaaaac 119  Q
    |||||||||||||||||||||||| | ||||| |||| |||||| | |||||| ||||||||    
T  10075042 acatgaataagtttattaatatgacactagctctattatttcaccaatacttatcagaaaac 10074981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 10136381 - 10136332
Alignment:
Q  45 aggcttgttcatgacatgaataagtttattaatatgaaaatagctatatt 94  Q
    |||||| |||||||||||||||||||||||||||||| | ||||| ||||    
T  10136381 aggcttattcatgacatgaataagtttattaatatgacactagctgtatt 10136332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 39602285 - 39602188
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctctt 244  Q
    ||||||||||| |||||| |||||||||| | || ||| |||||| |||||||||||| |  ||||  || ||||||||||||| | ||||| |||||    
T  39602285 taagttataagctgttttcataagctatctttgagaacttatgaaaataagttgaaaacaatttatgaacatgtcataagctgtcttcataagctctt 39602188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 30923927 - 30923883
Alignment:
Q  193 ataagttgaaaatagcttatagacgtgtcataagctgtttccata 237  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||||    
T  30923927 ataagctgaaaacagcttatagacatgtcataagctgtttccata 30923883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 21367667 - 21367754
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagac-gtgtcataagctgtttccataa 238  Q
    ||||||||||||| |||||||||| |||| ||| |||||| ||||| |||||| ||||| |  ||  ||||||||||||||| |||||    
T  21367667 tataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttgtgaacaatgtcataagctgttttcataa 21367754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 34382937 - 34383028
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataa 238  Q
    ||||||||||||| |||| |||||||||| || | | | || ||| ||||| |||||| | ||||||||| | |||||| ||||||||||||    
T  34382937 taagttataagttcttttcataagctatcctgaaaagcttaagaaaataagatgaaaacaacttatagacatatcataatctgtttccataa 34383028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 48300511 - 48300472
Alignment:
Q  193 ataagttgaaaatagcttatagacgtgtcataagctgttt 232  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  48300511 ataagttgaaaatagcttatacacatgtcataagctgttt 48300472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 901930 - 901984
Alignment:
Q  158 ttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat 212  Q
    |||||||||||||||||  |||| ||| |||||| |||||||||||| |||||||    
T  901930 ttgtttttataagctatattggagaacttatgaaaataagttgaaaaaagcttat 901984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 45541580 - 45541657
Alignment:
Q  161 tttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataa 238  Q
    |||| |||||||||| |||||||| |||||  ||||  |||||| |||||||  || ||||||||||||||| |||||    
T  45541580 ttttcataagctatcttggataacttatgagaataacctgaaaacagcttatgaacatgtcataagctgttttcataa 45541657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 5391913 - 5391965
Alignment:
Q  186 tatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataa 238  Q
    |||||| |||||||||||| |||||||  || ||||||||||||||| |||||    
T  5391913 tatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataa 5391965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 47132331 - 47132391
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat 212  Q
    |||| ||||||||||||||||||  |||| ||  |||||| |||||||||||| |||||||    
T  47132331 tataggttgtttttataagctatattggagaagttatgaaaataagttgaaaaaagcttat 47132391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 26473825 - 26473731
Alignment:
Q  149 agttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    |||| ||||||||||| |||||||||| | || | | |||||| ||||||| ||| |||||||||||| ||||||||||||||| ||||| ||||    
T  26473825 agttgtaagttgttttcataagctatcctagagagcttatgaaaataagttaaaactagcttatagacatgtcataagctgttttcataagctct 26473731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 42597453 - 42597513
Alignment:
Q  167 taagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagc 227  Q
    ||||||||| |||||||| |||| | |||||||||||| ||||||||||| ||||||||||    
T  42597453 taagctatcttggataacttatggaaataagttgaaaacagcttatagacatgtcataagc 42597513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 269
Target Start/End: Original strand, 11415149 - 11415271
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctcttta 246  Q
    ||||||||| | |||||| |||||||||| | || |   | |||| ||||| ||| |||||||||| ||| ||| ||||||||||||||||| |||| ||    
T  11415149 taagttatacgctgttttcataagctatcctagagagtttgtgaaaataagctgagaatagcttatggacatgttataagctgtttccataaactctcta 11415248  T
Q  247 aagcaatctaacaaattcttatg 269  Q
    || |||||| |||| | ||||||    
T  11415249 aaacaatctcacaagtacttatg 11415271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 6509378 - 6509282
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    |||| |||||| |||||| |||||||||| |||| | | |||  | ||||| ||||||||| |||||| | |||||||||||||||| |||| ||||    
T  6509378 taagctataagctgttttcataagctatcctggagagcttattgaaataaggtgaaaatagtttataggcatgtcataagctgtttctataagctct 6509282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 31875631 - 31875579
Alignment:
Q  186 tatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataa 238  Q
    |||||| ||||||||||||| |||||| ||| ||||||||| |||||||||||    
T  31875631 tatgaaaataagttgaaaatggcttatggacatgtcataagttgtttccataa 31875579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 243
Target Start/End: Complemental strand, 11569527 - 11569436
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    |||||| |||||| ||||||||||||||| |   | |||| ||||| |||||| | |||||  || ||||||||||||||||||||| ||||    
T  11569527 tataagctgttttcataagctatcatggagagattttgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctct 11569436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 39551279 - 39551193
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataa 238  Q
    ||||||||||||| ||||||| || |||| | | ||| || ||||||| |||| ||||| | ||| ||||||||| |||||||||||    
T  39551279 tataagttgttttcataagctttcctggagagcttataaaaataagttaaaaacagcttttggacatgtcataagttgtttccataa 39551193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 9956889 - 9956832
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaa 204  Q
    |||||||||||||||||| |||| ||||| |||| ||| |||||| ||||| ||||||    
T  9956889 taagttataagttgttttcataatctatcttggagaacttatgaaaataagctgaaaa 9956832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 26499766 - 26499807
Alignment:
Q  202 aaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    ||||||| |||||||||| |||||||||||| ||||||||||    
T  26499766 aaatagcctatagacgtgccataagctgttttcataacctct 26499807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 43504751 - 43504812
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttata 213  Q
    |||||| ||||||||||||||||| |||| ||| |||| | ||||| |||||| ||||||||    
T  43504751 tataagatgtttttataagctatcttggagaacttatggaaataagctgaaaacagcttata 43504812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 20672757 - 20672825
Alignment:
Q  159 tgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagc 227  Q
    ||||||||||||||||| |||| | | |||||| ||||| |||||| |||||||  || ||||||||||    
T  20672757 tgtttttataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagc 20672825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 27028831 - 27028891
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat 212  Q
    |||||| |||||| |||||||||| |||| | | |||||| ||||| ||||||||||||||    
T  27028831 tataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaatagcttat 27028891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 30259121 - 30259205
Alignment:
Q  159 tgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    |||||||||||  |||| |||| ||| |||| | ||||  |||||| | ||||||||| | ||||||||||||||||||| ||||    
T  30259121 tgtttttataaattatcttggagaacttatggaaataaactgaaaacaacttatagacatatcataagctgtttccataagctct 30259205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 37461137 - 37461193
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaa 203  Q
    |||| |||| |||||||| ||||||||||| ||||||| ||| || |||||||||||    
T  37461137 taagctatatgttgttttcataagctatcacggataacttataaaaataagttgaaa 37461193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 20368253 - 20368164
Alignment:
Q  149 agttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataa 238  Q
    |||||||||||||||| ||||||| || |||| ||| |||||| ||||||||||| ||||||||  || ||||||||| ||||| |||||    
T  20368253 agttataagttgttttcataagctttcttggagaacttatgaaaataagttgaaactagcttatgaacatgtcataagttgttttcataa 20368164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 280
Target Start/End: Original strand, 2455819 - 2455938
Alignment:
Q  161 tttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctctttaaagcaatctaacaa 260  Q
    |||| |||||||||| |||| | | |||| | ||||||||||||||| |||| | | ||||||||| ||||||||||| |||||  || ||||||  |||    
T  2455819 ttttcataagctatcttggagagcttatggaaataagttgaaaatagtttatgggcatgtcataagttgtttccataagctcttctaaacaatctcgcaa 2455918  T
Q  261 attcttatgcccgtagataa 280  Q
     | |||||||| ||||||||    
T  2455919 gtgcttatgccggtagataa 2455938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 31624085 - 31624176
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataa 238  Q
    |||| |||||| |||||| ||| |||||| |||| ||  |||||| |||||||||||| |||||||  || ||||||||||||||| |||||    
T  31624085 taagctataagctgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataa 31624176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 7148661 - 7148757
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    |||| |||||| | |||| |||||||| | |||| | | |||||| |||||||||||||||||||| |||  |||||||| ||||||| ||| ||||    
T  7148661 taagctataaggtattttaataagctaccctggagagcttatgaaaataagttgaaaatagcttatggacaagtcataagttgtttccgtaagctct 7148757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 4246410 - 4246493
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttcca 235  Q
    |||||| |||||| ||||||||| ||||| | | ||| || |||||||||||| ||||||| ||| |||||| || ||||||||    
T  4246410 tataagctgttttcataagctattatggagagcatataaaaataagttgaaaacagcttatggacatgtcatgagttgtttcca 4246493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 2460211 - 2460130
Alignment:
Q  162 ttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    |||| |||||||| ||||| | | |||| | |||||||||||| | |||| |||| ||||||||| ||||||||||| ||||    
T  2460211 ttttgtaagctattatggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctct 2460130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 33828641 - 33828674
Alignment:
Q  147 taagttataagttgtttttataagctatcatgga 180  Q
    |||||||||||||||||| |||||||||||||||    
T  33828641 taagttataagttgttttaataagctatcatgga 33828674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 6536615 - 6536675
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat 212  Q
    ||||||||||||||| |||||||  |||| ||  |||||| |||||||||||| |||||||    
T  6536615 tataagttgtttttagaagctatattggagaatttatgaaaataagttgaaaaaagcttat 6536675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 8420252 - 8420176
Alignment:
Q  167 taagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    |||||||| ||||| | | |||| | |||||||||||||||||| | ||| ||||||||||| |||| |||| ||||    
T  8420252 taagctataatggagagcttatggaaataagttgaaaatagcttgtggacatgtcataagctatttctataagctct 8420176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 32171446 - 32171362
Alignment:
Q  159 tgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    |||||| || || |||| |||||| | |||| | ||||| |||||||||||| | ||| ||||||||||||||| ||||| ||||    
T  32171446 tgttttcattagttatcctggatagcttatggaaataagctgaaaatagcttctggacttgtcataagctgttttcataagctct 32171362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 41957526 - 41957429
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctctt 244  Q
    ||||||||||| |||||| |||||||||| | || ||| |||||| ||||| |||||| | ||||| ||| ||||||||||||||||| ||| |||||    
T  41957526 taagttataagctgttttcataagctatccttgagaacttatgaaaataagatgaaaacaacttatggacatgtcataagctgtttccgtaagctctt 41957429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 31688056 - 31688125
Alignment:
Q  169 agctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataa 238  Q
    |||||||||| | | | |||||| ||||||||||||||||||||||||  ||||||||||||||| ||||    
T  31688056 agctatcatgtagagcttatgaaaataagttgaaaatagcttatagacaagtcataagctgtttctataa 31688125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 32172648 - 32172744
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    |||| |||||| |||||| ||||||||||||| | |||  ||| | ||||| ||||||| |||||| ||| ||||||||| ||||||||||| ||||    
T  32172648 taagctataagctgttttcataagctatcatgaagaactaatggaaataagctgaaaatggcttatggacatgtcataagttgtttccataagctct 32172744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 2568653 - 2568744
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataa 238  Q
    |||| ||||||||||||| ||||||||||||||| | |  ||||| ||||| | |||||| |||||  |  ||||||||||||||| |||||    
T  2568653 taagctataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaataacttatgaatatgtcataagctgttttcataa 2568744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 32703346 - 32703268
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgt 230  Q
    ||||||||||||| ||||||||||  ||| ||  ||| || ||||| |||||| || ||||| ||||||||||||||||    
T  32703346 tataagttgttttcataagctatctaggagaatttataaaaataagctgaaaacagtttataaacgtgtcataagctgt 32703268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 37954689 - 37954743
Alignment:
Q  155 aagttgtttttataagctatcatggataacctatgaacataagttgaaaatagct 209  Q
    ||||||||||||||||||||  |||| ||| |||||| |||||||||||| ||||    
T  37954689 aagttgtttttataagctatattggagaacatatgaaaataagttgaaaaaagct 37954743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 6587182 - 6587097
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgttt 232  Q
    |||| ||||||||||||| |||||||||  |||| ||| | |||| ||||| || ||| |||||||  || |||||||||||||||    
T  6587182 taagctataagttgttttcataagctatagtggagaacttgtgaaaataagctgtaaacagcttatgaacctgtcataagctgttt 6587097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 34245719 - 34245752
Alignment:
Q  147 taagttataagttgtttttataagctatcatgga 180  Q
    |||| |||||||||||||||||||||||||||||    
T  34245719 taagctataagttgtttttataagctatcatgga 34245752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 4273406 - 4273362
Alignment:
Q  193 ataagttgaaaatagcttatagacgtgtcataagctgtttccata 237  Q
    |||||||||||| | |||||||||  |||||||||||||||||||    
T  4273406 ataagttgaaaacaacttatagacaagtcataagctgtttccata 4273362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 39105471 - 39105551
Alignment:
Q  159 tgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagac-gtgtcataagctgtttccataa 238  Q
    |||||| |||||||||| |||| ||| |||||| ||||| | ||||||||||||  ||  ||||||||||||||| |||||    
T  39105471 tgttttcataagctatcttggagaacttatgaaaataagctaaaaatagcttatgaacaatgtcataagctgttttcataa 39105551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 15515536 - 15515632
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    |||| ||||||||||||| ||||| ||||||||||| | |||| | |||| ||||||||||| ||| ||| ||||||||| ||||| ||||| ||||    
T  15515536 taagctataagttgttttcataagttatcatggatagcttatggaaataaattgaaaatagcgtattgacatgtcataagttgttttcataaactct 15515632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 243
Target Start/End: Original strand, 27140478 - 27140569
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    |||||| |||||||||||||||||||||| | | |||| | ||||| |||||| | ||||| ||| ||||||||||||||||| ||| ||||    
T  27140478 tataagctgtttttataagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgtttccttaaactct 27140569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 7218149 - 7218070
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataag 226  Q
    |||| ||||||||||||| |||| ||||| |||| ||| |||||| |||||||||||| ||||| |  ||||||||||||    
T  7218149 taagctataagttgttttcataacctatcctggagaacttatgaaaataagttgaaaacagcttgtgaacgtgtcataag 7218070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 234
Target Start/End: Complemental strand, 28689529 - 28689440
Alignment:
Q  147 taagttataagttgtttt--tataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttcc 234  Q
    |||| |||||||||||||  ||||||||||| |||| | | |||||| ||||| |||||| | ||||| ||| |||||||||||||||||    
T  28689529 taagctataagttgttttcatataagctatcttggaaagcttatgaaaataagctgaaaacaacttatggacatgtcataagctgtttcc 28689440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 31294591 - 31294517
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataag 226  Q
    |||||||||||||| ||| ||||||| || | | |||||| |||||||||||| ||||||| || ||||||||||    
T  31294591 tataagttgtttttgtaaactatcatagagagcttatgaaaataagttgaaaagagcttatggatgtgtcataag 31294517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 49938745 - 49938834
Alignment:
Q  150 gttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat-agacgtgtcataagctgtttccataa 238  Q
    |||||||||||||||||||||||||  | || ||| |||||| |||||||||||| ||||| | | |  ||||||||||||||| |||||    
T  49938745 gttataagttgtttttataagctatattagagaacttatgaaaataagttgaaaaaagcttttgaaaattgtcataagctgttttcataa 49938834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 39270500 - 39270404
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    |||| |||||| |||||| |||||||| ||| || | | |||||| |||||||||||| ||||||| ||| || || ||||||||| ||||| ||||    
T  39270500 taagatataagctgttttcataagctaccatagagagcatatgaaaataagttgaaaacagcttatggacatgccaaaagctgttttcataagctct 39270404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 11695895 - 11695946
Alignment:
Q  186 tatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccata 237  Q
    |||||| |||||||||||| ||||||| ||| |||||||| |||||||||||    
T  11695895 tatgaaaataagttgaaaacagcttatggacatgtcataaactgtttccata 11695946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 1510382 - 1510320
Alignment:
Q  150 gttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat 212  Q
    ||||||||||||||||||||||| |  |||| ||| || ||| |||||||||||| |||||||    
T  1510382 gttataagttgtttttataagctctattggagaacttacgaaaataagttgaaaaaagcttat 1510320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 15581301 - 15581382
Alignment:
Q  199 tgaaaatagcttatagacgtgtcataagctgtttccataacctctttaaagcaatctaacaaattcttatgcccgtagataa 280  Q
    |||||| ||||||||||| ||||||||| ||||||||| | |||||  || |||||| |||| | |||||| | ||||||||    
T  15581301 tgaaaacagcttatagacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgcttatgtcagtagataa 15581382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 27145968 - 27146013
Alignment:
Q  199 tgaaaatagcttatagacgtgtcataagctgtttccataacctctt 244  Q
    |||||||| ||||| ||| ||||||||||||||||||||| |||||    
T  27145968 tgaaaataacttatggacatgtcataagctgtttccataagctctt 27146013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 27820400 - 27820347
Alignment:
Q  159 tgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat 212  Q
    ||||||||||||||||| |||| ||  |||||| ||||| ||||||||||||||    
T  27820400 tgtttttataagctatcttggagaatttatgaaaataagctgaaaatagcttat 27820347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 32515497 - 32515420
Alignment:
Q  166 ataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    ||||||||||||||| | | |||  | |||||||||||| | ||||| ||| ||||||| ||||||||||||| ||||    
T  32515497 ataagctatcatggagagcttatagatataagttgaaaacaacttattgacatgtcatacgctgtttccataagctct 32515420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 35179134 - 35179199
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat 212  Q
    ||||||||||| |||||| ||||| ||| ||||| ||| |||||| ||||| |||||| |||||||    
T  35179134 taagttataagctgttttcataagttattatggagaacttatgaaaataagctgaaaacagcttat 35179199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 39603899 - 39603842
Alignment:
Q  154 taagttgtttttataagctatcatggataacctatgaacataagttgaaaatagctta 211  Q
    ||||||||||||||| |||||  |||||| | |||||| ||||| |||||||||||||    
T  39603899 taagttgtttttatatgctattttggatagcttatgaaaataagctgaaaatagctta 39603842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 43338125 - 43338202
Alignment:
Q  161 tttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataa 238  Q
    |||| |||||||| |||||| | | |||||| ||| | ||||||||| ||||  || |||||||||||||||||||||    
T  43338125 ttttcataagctaacatggagagcttatgaaaataggctgaaaatagattatgaacatgtcataagctgtttccataa 43338202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 51695570 - 51695505
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat 212  Q
    |||||||| || |||||| |||||||||| |||| ||  |||||| ||||| ||||||||||||||    
T  51695570 taagttatcagatgttttcataagctatcttggagaatttatgaaaataagctgaaaatagcttat 51695505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 473164 - 473224
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat 212  Q
    ||||||||||||||||||| | |  |||| ||| |||||| |||||||||||| |||||||    
T  473164 tataagttgtttttataagttctattggagaacttatgaaaataagttgaaaaaagcttat 473224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 3234085 - 3234033
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaa 204  Q
    |||||||||||||||||||||||  |||| ||| |||||| |||||| |||||    
T  3234085 tataagttgtttttataagctatattggagaacttatgaaaataagtagaaaa 3234033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 12564569 - 12564493
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagct 228  Q
    |||| |||||||| |||||||||| |||| ||| |||| | ||||| |||||| | ||||| ||| |||||||||||    
T  12564569 tataggttgttttcataagctatcttggagaacttatggaaataagctgaaaacaacttattgacttgtcataagct 12564493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 25944427 - 25944491
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagctta 211  Q
    |||||||||||  ||||| |||||||||| ||||| |  |||||| ||||| |||||||||||||    
T  25944427 taagttataagcggttttcataagctatcctggattaattatgaaaataagctgaaaatagctta 25944491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 26779995 - 26779943
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaa 204  Q
    ||||||||||||| |||||||||| || | ||| |||||| ||||||||||||    
T  26779995 tataagttgttttcataagctatcttgaagaacttatgaaaataagttgaaaa 26779943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 29270347 - 29270299
Alignment:
Q  156 agttgtttttataagctatcatggataacctatgaacataagttgaaaa 204  Q
    ||||||||||||||||||||||| | ||| ||| || ||||||||||||    
T  29270347 agttgtttttataagctatcatgaagaacttatcaaaataagttgaaaa 29270299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 35925704 - 35925776
Alignment:
Q  166 ataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataa 238  Q
    ||||||||||||||| |   |||| | |||||||||||| |||||||  || ||||||||||||||| |||||    
T  35925704 ataagctatcatggagagtttatggaaataagttgaaaacagcttatgaacatgtcataagctgttttcataa 35925776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 42174855 - 42174915
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat 212  Q
    ||||||||||||||||||| |||  |||| ||| |||||| ||||||| |||| |||||||    
T  42174855 tataagttgtttttataagttatattggagaacttatgaaaataagttaaaaacagcttat 42174915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 281
Target Start/End: Original strand, 11513893 - 11514025
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctcttta 246  Q
    |||| ||||||||||||| ||||||||||||||| ||| | || | ||||| |||||||||||||||| | || |||  ||||||| ||||| |||| ||    
T  11513893 taagctataagttgttttcataagctatcatggagaacttttggaaataagctgaaaatagcttataggcatgccat--gctgttttcataagctctcta 11513990  T
Q  247 aagcaatctaacaaattcttatgcccgtagataat 281  Q
    || || ||| |||| | |||||||  |||||||||    
T  11513991 aaacagtctcacaagtgcttatgctagtagataat 11514025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 10563633 - 10563545
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttcca 235  Q
    |||||||||||||||||| |||||||||  || | | | || ||| ||||| |||||||||||||| ||| ||||||| ||||||||||    
T  10563633 taagttataagttgttttcataagctatgctgaagagcttaagaaaataagctgaaaatagcttatggacatgtcataggctgtttcca 10563545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 43279599 - 43279512
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat-agacgtgtcataagctgtttccataa 238  Q
    |||||||||||||||||||||||  |||| ||| | |||| |||||||||||| ||||||| | |  ||||||||||||||| |||||    
T  43279599 tataagttgtttttataagctatattggagaacttgtgaaaataagttgaaaaaagcttatgaaaattgtcataagctgttttcataa 43279512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 41851234 - 41851141
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctcttt 245  Q
    |||||||| |||||||| |||||| |||||||| |||| | ||||  |||||   |||||| ||| ||||||||||||||||| ||| ||||||    
T  41851234 tataagttatttttatatgctatcttggataacttatggagataaagtgaaatcggcttatggacatgtcataagctgtttccgtaagctcttt 41851141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 18066123 - 18066215
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat-agacgtgtcataagctgtttccataa 238  Q
    |||| |||||| |||||| |||||||||| |||| ||| || ||| ||||| |||||||||||||| ||   ||||||||||||||| |||||    
T  18066123 taagctataagctgttttcataagctatcttggagaacttaagaaaataaggtgaaaatagcttatgagcaatgtcataagctgttttcataa 18066215  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 26202028 - 26202088
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat 212  Q
    ||||||||||||||||||| |||  |||| ||| |||||| |||||||||||| |||||||    
T  26202028 tataagttgtttttataagatatattggagaacttatgaaaataagttgaaaaaagcttat 26202088  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 39983337 - 39983413
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcat 223  Q
    |||| ||||||||||||| |||||||||| |||| | |  ||||| ||||  |||||||||||||||||| ||||||    
T  39983337 taagctataagttgttttcataagctatcctggagagctaatgaaaataaactgaaaatagcttatagacatgtcat 39983413  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 12289795 - 12289857
Alignment:
Q  150 gttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat 212  Q
    ||||||||||||||||||||  |||  |||| ||| |||||| |||||||||||| |||||||    
T  12289795 gttataagttgtttttataatttatattggagaacttatgaaaataagttgaaaaaagcttat 12289857  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 34102013 - 34102098
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgttt 232  Q
    |||||||| |||||||||||||||||||| ||||||   || ||  |||||||||||||||  |||  || ||| |||||||||||    
T  34102013 taagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagagtatgtacatgttataagctgttt 34102098  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 34652097 - 34652020
Alignment:
Q  161 tttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataa 238  Q
    |||| |||||||||| |||| | | |||| | |||||||||||| ||||||| ||| ||||||||| |||||| ||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttctataa 34652020  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 1742107 - 1742011
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataacctct 243  Q
    |||| |||||| |||||| |||| |||||||| | |   |||| | |||||||||| |||||||||  || ||||||||| ||||||||||| ||||    
T  1742107 taagatataagctgttttcataatctatcatgaagagtttatggaaataagttgaagatagcttatgcacatgtcataagttgtttccataagctct 1742011  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 7751516 - 7751488
Alignment:
Q  147 taagttataagttgtttttataagctatc 175  Q
    |||||||||||||||||||||||||||||    
T  7751516 taagttataagttgtttttataagctatc 7751488  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 9477947 - 9478003
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaa 203  Q
    |||||||||||||||||| |||||||||| |||| |   |||||| |||||||||||    
T  9477947 taagttataagttgttttcataagctatcctggagaggttatgaaaataagttgaaa 9478003  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 15377815 - 15377851
Alignment:
Q  201 aaaatagcttatagacgtgtcataagctgtttccata 237  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  15377815 aaaatagcttatggacgtgtcataagttgtttccata 15377851  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 20952355 - 20952407
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaa 204  Q
    |||||||||||||||| ||||||  |||| ||| |||||| ||||||||||||    
T  20952355 tataagttgtttttattagctatattggagaacttatgaaaataagttgaaaa 20952407  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 32106835 - 32106783
Alignment:
Q  186 tatgaacataagttgaaaatagcttatagacgtgtcataagctgtttccataa 238  Q
    ||||||||||| ||||||| |||||| |||  ||||||||||||||| |||||    
T  32106835 tatgaacataatttgaaaacagcttacagatatgtcataagctgttttcataa 32106783  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 32592586 - 32592646
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat 212  Q
    |||||||||||||||||||| ||  |||| ||| |||||| ||||||||| || |||||||    
T  32592586 tataagttgtttttataagcaatattggagaacttatgaaaataagttgagaaaagcttat 32592646  T

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Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 84747 - 84690
Alignment:
Q  63 aataagtttattaatatgaaaatagctatattgtttcactactacttaccagaaaacc 120  Q
    ||||||||||||||||||| | ||||| |||| |||||||| ||||||| ||||||||    
T  84747 aataagtttattaatatgacactagctctattatttcactaatacttacgagaaaacc 84690  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 29768668 - 29768623
Alignment:
Q  193 ataagttgaaaatagcttatagacgtgtcataagctgtttccataa 238  Q
    |||||||||||||||||||||||| |||||||||| |||| |||||    
T  29768668 ataagttgaaaatagcttatagacatgtcataagccgttttcataa 29768623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 19022655 - 19022605
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaa 202  Q
    |||||||||||||||||||||||  |||| ||| |||||| ||||||||||    
T  19022655 tataagttgtttttataagctatattggagaacttatgaaaataagttgaa 19022605  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 44821954 - 44822011
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaa 204  Q
    ||||||||||| |||||| |||||||||  |||| ||| |||||| ||||||||||||    
T  44821954 taagttataagctgttttcataagctattctggagaacttatgaaaataagttgaaaa 44822011  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 45078287 - 45078352
Alignment:
Q  161 tttttataagctatcatggataacctatgaacataagttgaaaatagcttatagacgtgtcataag 226  Q
    |||| ||||||||||| ||||||| | || | |||||||||||| ||||||| ||| |||||||||    
T  45078287 ttttcataagctatcacggataacttgtggaaataagttgaaaacagcttatggacatgtcataag 45078352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 45790500 - 45790443
Alignment:
Q  147 taagttataagttgtttttataagctatcatggataacctatgaacataagttgaaaa 204  Q
    |||| |||||||||||||||||| ||||  |||||||| |||||| ||||| ||||||    
T  45790500 taagctataagttgtttttataaactatattggataacttatgaaaataagctgaaaa 45790443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 47130856 - 47130803
Alignment:
Q  151 ttataagttgtttttataagctatcatggataacctatgaacataagttgaaaa 204  Q
    |||||||||||||| |||||||||| |||| ||| | |||| ||||||||||||    
T  47130856 ttataagttgttttcataagctatcttggagaacttgtgaaaataagttgaaaa 47130803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 175
Target Start/End: Original strand, 32210262 - 32210290
Alignment:
Q  147 taagttataagttgtttttataagctatc 175  Q
    |||||||||||||||||||||||||||||    
T  32210262 taagttataagttgtttttataagctatc 32210290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 44686972 - 44687040
Alignment:
Q  194 taagttgaaaatagcttatagacgtgtcataagctgtttccataacctctttaaagcaatctaacaaat 262  Q
    ||||||||||| |||| || ||| ||||||||| ||||||||||| |||||| ||| | ||| ||||||    
T  44686972 taagttgaaaacagctcatggacatgtcataagttgtttccataagctcttttaagaagtctcacaaat 44687040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 48470044 - 48470104
Alignment:
Q  152 tataagttgtttttataagctatcatggataacctatgaacataagttgaaaatagcttat 212  Q
    ||||||||||||| |||||||||  || ||||| |||||||||||| | |||| |||||||    
T  48470044 tataagttgttttcataagctattttgaataacttatgaacataagctcaaaaaagcttat 48470104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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