View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_low_22 (Length: 292)
Name: NF18040_low_22
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 3780312 - 3780575
Alignment:
| Q |
15 |
atgaaaagaagatgaacaaggagttggagtcctagattcaaatctgaacgaagaagtaaatattaatctaacaaacaaaccacaaacatttttcattcnn |
114 |
Q |
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| T |
3780312 |
atgaaaagaagatgaacaaggagttggagtcctaggttcaaatctgaacgaagaagtaaatattaatctaacaaacaaaccactaacatttttcattcaa |
3780411 |
T |
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| Q |
115 |
nnnnnnnnnnn--caaatgtagggcttataaccaacaaacaataactacatcttcatgtgttacatgaagaagtactatttatagccaacaaccaatgac |
212 |
Q |
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| T |
3780412 |
aaaaaaaaaaaaacaaatgtagggcttataaccaacaaacaataactacatcttcatgtgttacatgaagaagtactatttatagccaacaaccaatgac |
3780511 |
T |
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| Q |
213 |
tacgtatgcatgaattatgtatgacttatagccaataaggaatgattggttcttcatatattac |
276 |
Q |
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| T |
3780512 |
tacgtatgcatgaattatgtatgacttatagccaataaggaatgactggttcttcatatattac |
3780575 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 35753090 - 35753128
Alignment:
| Q |
51 |
ttcaaatctgaacgaagaagtaaatattaatctaacaaa |
89 |
Q |
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| T |
35753090 |
ttcaaatccgaatgaagaagtaaatattaatctaacaaa |
35753128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 37038185 - 37038222
Alignment:
| Q |
138 |
ttataaccaacaaacaataactacatcttcatgtgtta |
175 |
Q |
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| T |
37038185 |
ttataaccaacaatcaatgactacatcttcatgtgtta |
37038222 |
T |
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