View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_low_24 (Length: 275)
Name: NF18040_low_24
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 14701808 - 14702066
Alignment:
| Q |
1 |
cttttgttttttctctttattggggatctccaagttatcctatacataaattggcatgctttgctgcataatgagaaatagaatcaatcaaatagtattt |
100 |
Q |
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| T |
14701808 |
cttttgttttttctctttattggggatctccaagttatcctatacataaattggcatgctttgctgcataatgagaaatagaatcaatcaaatagtattt |
14701907 |
T |
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| Q |
101 |
gcaatgctctctctggatttatggtttaaaatgaaatataaaattaatcaatatgnnnnnnnnnnnnnnnngttgatatggtttaagtttgaggtttagt |
200 |
Q |
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| T |
14701908 |
gcaatgctctctctggatttatggtttaaaatgaaatataaaattaatcaatatg-----tttttttttttgttgatatggtttaagtttgaggtttagt |
14702002 |
T |
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| Q |
201 |
ttgatatccctgtttacagagcctttggattcttatacgcctcaagaatcattttggtgatgat |
264 |
Q |
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| T |
14702003 |
ttgatatccctgtttacagagcctttggattcttatacgcctcaagaatcattttggtgatgat |
14702066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 46231398 - 46231138
Alignment:
| Q |
1 |
cttttgttttttctctttattggggatctccaagttatcctatacataaattggcatgctttgctgcataatgagaaatagaatcaatcaaatagtattt |
100 |
Q |
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| T |
46231398 |
cttttgttttttctctttattggggatctccaagttatcctatacataaattggcatgctttgctgcataatgagaaatagaatcaatcaaatagtattt |
46231299 |
T |
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| Q |
101 |
gcaatgctctctctggatttatggtttaaaatgaaatataaaattaatcaatatgnnnnnnnnnnnnnnnngttgatatggtttaagtttgaggtttagt |
200 |
Q |
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| T |
46231298 |
gcaatgctctctctggatttatggtttaaaatgaaatataaaattaatcaatatg---tttttttttttttgttgatatggtttaagtttgaggtttagt |
46231202 |
T |
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| Q |
201 |
ttgatatccctgtttacagagcctttggattcttatacgcctcaagaatcattttggtgatgat |
264 |
Q |
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| T |
46231201 |
ttgatatccctgtttacagagcctttggattcttatacgcctcaagaatcattttggtgatgat |
46231138 |
T |
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