View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_low_26 (Length: 267)
Name: NF18040_low_26
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 12014274 - 12014030
Alignment:
| Q |
17 |
aaataatggagaagtggatggtgatgcaaaagacaaggataatgaaaatcggtttggtgccctcgagagaattaagaacct-----------aaatgtta |
105 |
Q |
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| T |
12014274 |
aaataatggagaagtggatggtgatgcaaaagacaaggataatgaaaatcggtttggtgccctcaaga--attaagaacctgaaacggaactaaatgtta |
12014177 |
T |
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| Q |
106 |
ggtgagaggattcaagttttatattttgatagcatgaaattgattttgatgattatgatgaatctatgattactactgattagttctccaagtacaaagt |
205 |
Q |
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| T |
12014176 |
ggtgagaggattcaagttttatattttgatagcatgaaattgattttgatgattatgatgaatctatgattactactgattagttctccaagtacaaagt |
12014077 |
T |
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| Q |
206 |
acaatgttaaaactcttatgaagtatactcttatgagtaaacacagg |
252 |
Q |
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| T |
12014076 |
acaatgttaaaactcttatgaagtatactcttatgagtaaacacagg |
12014030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 11993312 - 11993235
Alignment:
| Q |
17 |
aaataatggagaagtggatggtgatgcaaaagacaaggataatgaaaatcggtttggtgccctcgagagaattaagaa |
94 |
Q |
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| T |
11993312 |
aaataatggagaagtagatggtgatgccaaagaaaaggataatgaagatcgatttggtgccctcgagagaattaagaa |
11993235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 159
Target Start/End: Original strand, 3032114 - 3032257
Alignment:
| Q |
27 |
gaagtggatggtgatgcaaaagacaaggataatgaaaatcggtttggtgccctcgagagaattaagaacc-----------taaatgttaggtgagagga |
115 |
Q |
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| T |
3032114 |
gaagtagatgatggtgcaaaagagaaggataatgaaagtcggcttggtgcccttgagagaattaagaagctgaaacgaaattaaatgttgggttagagta |
3032213 |
T |
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| Q |
116 |
ttcaagttttatattttgatagcatgaaattgattttgatgatt |
159 |
Q |
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| T |
3032214 |
ttccagttaaaagttttgatagcatgaaattgattttgatgatt |
3032257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 11992057 - 11991997
Alignment:
| Q |
166 |
aatctatgattactactgattagttctccaagtacaaagtacaatgttaaaactcttatga |
226 |
Q |
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| T |
11992057 |
aatctatgattgctactgattaattctccaagcacgaagtacaatgtaaaaaatcttatga |
11991997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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