View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_low_28 (Length: 248)
Name: NF18040_low_28
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 6528237 - 6527997
Alignment:
| Q |
1 |
tggctcatgcaactttttagaatctaaaaagttttaaccaaagttaaatggtaaaaagaggtaagtataagtccttcaagtttggaaggccttcctagtg |
100 |
Q |
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| T |
6528237 |
tggctcatgcaactttttagaatctaaaaagttttaaccaaagttaaagggtaaaaagaggtaagtataagtccttcaagtttggaaggccttcctagtg |
6528138 |
T |
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| Q |
101 |
ggaaggggtttttgttatttgacggtagaatatgcattgtaatatggattggtgagtagacaatttcaccaaaaatgaatacttacaaaccaatagttgt |
200 |
Q |
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| T |
6528137 |
ggaatgggtttttgttatttgacggtagaatatgcattgtaatatggattggtgagtagacaatttcaccaaaaatgaatacttacaaaccaatagttgt |
6528038 |
T |
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| Q |
201 |
gcttacactatagaatagccagatatgtgtctaagaataat |
241 |
Q |
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| T |
6528037 |
gcttacactatagaatagccagatatgtgtctaagaataat |
6527997 |
T |
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