View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_low_29 (Length: 246)
Name: NF18040_low_29
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 32761873 - 32762097
Alignment:
| Q |
4 |
aacatgtcaaagtgcttaaacaagaagcttttgttgatagatcatctgagtttccggcaaagtttttgttccaagaagtggaatcaactcttaatcaatt |
103 |
Q |
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| T |
32761873 |
aacatgtcaaagtgcttaaacaagaagcttttgttgatagatcatctgagtttccggcgaagtttttgttccaagaagtggaatcaactcttaatcaatt |
32761972 |
T |
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| Q |
104 |
ggttcgtaatccatgtcattcccaagttacaactacatgttatcttggcttctactgatctagattgttttttcttagtactaagagttcatattgaaga |
203 |
Q |
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| T |
32761973 |
ggttcgtaatccatgccattcccaagttacaactacatgttatcttggcttctactgatctagattgttttttcttagtatcaagagttcagatcgaaga |
32762072 |
T |
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| Q |
204 |
tgtgtctggtgtctaacacgaatta |
228 |
Q |
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| T |
32762073 |
tgtgtctggtgtctaacacgaatta |
32762097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 32753885 - 32754033
Alignment:
| Q |
13 |
aagtgcttaaacaagaagcttttgttgatagatcatctgagtttccggcaaagtttttgttccaagaagtggaatcaactcttaatcaattggttcgtaa |
112 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||| | | |||||||||||||||| || ||||||||||||||||||| | ||||| |||| |
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| T |
32753885 |
aagtgcttgaacaagaagcttttgttgataggtcatctgagtctgagccaaagtttttgttccaggaggtggaatcaactcttaatcgactggttggtaa |
32753984 |
T |
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| Q |
113 |
tccatgtcattcccaagttacaactacatgttatcttggcttctactga |
161 |
Q |
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| T |
32753985 |
tccacttccatcctaaattaccactccatgttagcttggcttctactga |
32754033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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