View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_low_34 (Length: 222)
Name: NF18040_low_34
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 20517711 - 20517918
Alignment:
| Q |
1 |
actcatgaattttaaccaatcnnnnnnngtgagttaaaatatatgttttaaaatgagtataattttgattggactaatgtgaattttaaccaatcaaata |
100 |
Q |
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| T |
20517711 |
actcatgaattttaaccaatcaaagaaagtgagttaaaatatatgttttaaaatgagtataattttgattggactaatgtgaattttaaccaatcaaata |
20517810 |
T |
|
| Q |
101 |
gaatgaattaaaatatatattttaaaatatgtgttgtttgcattaaacttgtttgaaggtagaatgaagtgtcaagttgttgcatatgaaagttcaagat |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20517811 |
gaatgaattaaaatatatattttaaaatgtgtgttgttagcattaaatttgtttgaaggtagagtgaagtgtcaagttgttgcatatgaaagttcaagat |
20517910 |
T |
|
| Q |
201 |
gttgaaca |
208 |
Q |
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|||||||| |
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| T |
20517911 |
gttgaaca |
20517918 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 13772443 - 13772376
Alignment:
| Q |
77 |
atgtgaattttaaccaatcaaatagaatgaattaaaatatatattttaaaatatgtgttgtttgcatt |
144 |
Q |
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||||||||||||| |||||||| | |||| ||| ||| || ||| ||||||||||||||||| ||||| |
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| T |
13772443 |
atgtgaattttaatcaatcaaaaaaaatgtattgaaaaatgtatgttaaaatatgtgttgttagcatt |
13772376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 105
Target Start/End: Complemental strand, 31758733 - 31758705
Alignment:
| Q |
77 |
atgtgaattttaaccaatcaaatagaatg |
105 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
31758733 |
atgtgaattttaaccaatcaaatagaatg |
31758705 |
T |
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