View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_low_6 (Length: 498)
Name: NF18040_low_6
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Complemental strand, 42511010 - 42510549
Alignment:
| Q |
17 |
agaatttgctacaaactgaatacgactttgcaacagccccaaaactgcagcaaaaacaaggattcggtgctatgaatagtgataagaacacgaggagtga |
116 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42511010 |
agaaattgctacaaactgaatacgactgtgcaacagccccaaaactgcagcaaaaacaaggattcagtgctatgaatagtgataagaacacgaggagtga |
42510911 |
T |
|
| Q |
117 |
aggagtgagtgtcatattcaaaataaggtgttaatgatgatggtgatggtgacagtggatctaattccaggtttggagttgtcatgttcatgaggtaaga |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | ||||||||||||||||||||||||||| |
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| T |
42510910 |
aggagtgagtgtcatattcaaaataaggtgttaatgatgatggtga------cagtggatctgattccagatctggagttgtcatgttcatgaggtaaga |
42510817 |
T |
|
| Q |
217 |
acgaacgattcaaattcggtgttgaattcagagttgtcatgttcatgaggttaagaacgaacgaacgtttggtttggattcggtgttgaagaacgagaac |
316 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42510816 |
acgaacgattcagattcggtgttgaattcagagttgtcatgttcatgaggttaagaacgaacgaacgtttggtttggattcgatgttgaagaacgagaac |
42510717 |
T |
|
| Q |
317 |
atcgactgggggttcagattcggtgttgaattcagggaagaacgagattaggatgaattagtgatggtgcgatggtgatgaattagagattgagatggta |
416 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
42510716 |
atcgactggggtttcagattcggtgttgaattcaggaaagaacgagattaggatgaatcagtgatggtgcgatggtgatgaattagagattgtgatggtg |
42510617 |
T |
|
| Q |
417 |
ttgtattcacgattctgattaatttgggattgtgatggtgaagacaattatggaaaaatgagatgatg |
484 |
Q |
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| T |
42510616 |
ttgtattcacgattctgattaatttgggattgtgatggtgaagacaattatggaaaaatgagatgatg |
42510549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Complemental strand, 36510723 - 36510264
Alignment:
| Q |
17 |
agaatttgctacaaactgaatacgactttgcaacagccccaaaactgcagcaaaaacaaggattcggtgctatgaatagtgataagaacacgaggagtga |
116 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36510723 |
agaaattgctacaaattgaatacgactctgcagcagccccaaaactgtagcaaaaacaaggattcggtgctatgaatagtgataagaacacgaggagtga |
36510624 |
T |
|
| Q |
117 |
aggagtgagtgtcatattcaaaataaggtgttaatgatgatggtgatggtgacagtggatctaattccaggtttggagttgtcatgttcatgaggtaaga |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||| ||||||||||||||||| |
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| T |
36510623 |
--------gtgtcatattcaaaataaggtgttaatgatgatggtgatggtgacagtggatctgatttcagatctggagttgttatgttcatgaggtaaga |
36510532 |
T |
|
| Q |
217 |
acgaacgattcaaattcggtgttgaattcagagttgtcatgttcatgaggttaagaacgaacgaacgtttggtttggattcggtgttgaagaacgagaac |
316 |
Q |
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|||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
36510531 |
acgaacgatttagattcagtgttgaattcatagttgtcatgttcatgaggttaagaacgaacaaaggtttggtttggattcggtgttgaagaacgagaac |
36510432 |
T |
|
| Q |
317 |
atcgactgggggttcagattcggtgttgaattcagggaagaacgagattaggatgaattagtgatggtgcgatggtgatgaattagagattgagatggta |
416 |
Q |
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|
|||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
36510431 |
atcgaccggggtttcagattcggtgttgaactcagggaagaacgagattaggatgaatcagtgatggtgcgatggtgatgaattagagattgtgatggtg |
36510332 |
T |
|
| Q |
417 |
ttgtattcacgattctgattaatttgggattgtgatggtgaagacaattatggaaaaatgagatgatg |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36510331 |
ttgtattcacgattctgattaatttgggattgtgatggtgaagacaattatggaaaaatgagatgatg |
36510264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 19465375 - 19465643
Alignment:
| Q |
17 |
agaatttgctacaaactgaatacgactttgcaacagccccaaaactgcagcaaaaacaaggattcggtgctatgaatagtgataagaacacgaggagtga |
116 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19465375 |
agaaattgctacaaactgaatacgactctgcaacagccccaaaactgcagcaaaaacaaggattcagtgctatgaatagtgataagaacacgaggagtga |
19465474 |
T |
|
| Q |
117 |
aggagtgagtgtcatattcaaaataaggtgttaatgatgatggtgatggtgacagtggatctaattccaggtttggagttgtcatgttcatgaggtaaga |
216 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||| | ||||||||||||||||||||||||||| |
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|
| T |
19465475 |
aggagtgagtgtcatattcaaaataaggtgttaatgatgatggtggtggtgacggtggatctgattccagatctggagttgtcatgttcatgaggtaaga |
19465574 |
T |
|
| Q |
217 |
acgaacgattcaaattcggtgttgaattcagagttgtcatgttcatgaggttaagaacgaacgaacgtt |
285 |
Q |
| |
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|| ||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19465575 |
acaaacgattcagattcagtgttgaattcagagttgtcatgtccatgaggttaagaacgaacgaacgtt |
19465643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 338 - 484
Target Start/End: Original strand, 19465647 - 19465793
Alignment:
| Q |
338 |
ggtgttgaattcagggaagaacgagattaggatgaattagtgatggtgcgatggtgatgaattagagattgagatggtattgtattcacgattctgatta |
437 |
Q |
| |
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||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| |
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| T |
19465647 |
ggtgttgaattcaagagagaacgagattaggatgaatcagtgatggtgcgatggtgatgaattagagattgtgacggtgttgtattcacgattctgatta |
19465746 |
T |
|
| Q |
438 |
atttgggattgtgatggtgaagacaattatggaaaaatgagatgatg |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19465747 |
atttgggattgtgatggtgaagacaattatggaaaaatgagatgatg |
19465793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 303 - 484
Target Start/End: Complemental strand, 34439028 - 34438847
Alignment:
| Q |
303 |
tgaagaacgagaacatcgactgggggttcagattcggtgttgaattcagggaagaacgagattaggatgaattagtgatggtgcgatggtgatgaattag |
402 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34439028 |
tgaagaacgagaacatcgaatggggtttcagattcaatgttgaattcagagaagaacgagattaggatgaatcagtgatggtgcgatggtgatgaattag |
34438929 |
T |
|
| Q |
403 |
agattgagatggtattgtattcacgattctgattaatttgggattgtgatggtgaagacaattatggaaaaatgagatgatg |
484 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34438928 |
agattgtgatggtgttgtattcacgattctgattaatttgggattgtgatggtgaagacaattatggaaaaatgagatgatg |
34438847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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