View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18040_low_7 (Length: 497)
Name: NF18040_low_7
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 1187721 - 1188201
Alignment:
| Q |
1 |
tattggaagacgagtgggtgtgggtgcagtttttcactaaaagaatttggagatgaaacaggcgttgttttctttttagtcgggttaggtttaccgggga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1187721 |
tattggaagacgagtgggtgtgggtgcagtttttcactaaaagaatttggagatgaaacagtcgttgttttctttttagtcgggttaggtttaccgggga |
1187820 |
T |
|
| Q |
101 |
agtcaccataactttctctctatctctcatatatgtttctctattattttatacataagttgggttcgattcgagttgatcagatgattttattatttcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1187821 |
agtcaccataactttctctctatctctcatatatgtttctctattattttatacgtaagttgggttcgattcgagttgatcagatgattttattatttcc |
1187920 |
T |
|
| Q |
201 |
tagcagttcagaacatttctactcagtatggcaatttgaagagtgttgatcaaatcaagatggtgattgataacaaatatgcttcaaatccttttcagaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1187921 |
tagcagttcagaacatttctactcagtatggcaatttgaagagtgttgatcaaatgaagatggtgattgataacaaatatgcttcaaatcctttttagaa |
1188020 |
T |
|
| Q |
301 |
tttaaaacaatattatacaataccaaaaaatacataataatacttagaagccaaaacatacattttgtttaaccaaaacatatatgataattgttttttg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1188021 |
tttaaaacaatattatacaataccaaaaaatacataataatacttagaagccaaaacatacattttgtttaaccaaaacatatatgataattgttttctg |
1188120 |
T |
|
| Q |
401 |
aacaagaccagtgtgtataataattagaagctgacttaatcattttgtaacctacgtgcatattctgtcaaagcaagtaag |
481 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1188121 |
aacaagaccagtgtatataataattagaagctgacttaatcattttgtaacctacgtgcatattctgttaaagcaagtaag |
1188201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University