View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_low_8 (Length: 496)
Name: NF18040_low_8
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 480
Target Start/End: Complemental strand, 5845816 - 5845350
Alignment:
| Q |
9 |
gtagattattcttgtatgaattaccgacatcaagttgctaaacgatactacgcggagggattaccaagaaatatatggtcaacaagaacataaagaaaag |
108 |
Q |
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| T |
5845816 |
gtagattactcttgtatgaattaccgacatcaagttgctaaacgatactacgcggagggattaccaagaaatatatggtcaacaagaacataaagaaaag |
5845717 |
T |
|
| Q |
109 |
gaagnnnnnnntaataaatcattagaaaggatatacaacgtcaatatccttagaagagagtgtgattcagtcggccagatacaatcataaaatcaaataa |
208 |
Q |
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| T |
5845716 |
gaagaaaaaaataataaatcattagaaag---atacaacgtcaatatccttagaagagactgtgattcagtcggccagatacaatcataaaatcaaataa |
5845620 |
T |
|
| Q |
209 |
atcattgatttagacttctctcaatctcatttagctctttacatggtttatc-aagagcatcttcaatagagtttccaagtgaatttatagagtgacaaa |
307 |
Q |
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| T |
5845619 |
atcattgatttagacttctctcaatctcacttagctctttacatggtttatcaaagagcatcttcaatagagttttcaagtgaatttaaagagtgacaaa |
5845520 |
T |
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| Q |
308 |
tcttttacttttattggaggaactatgatgtgacaatgtgaataacaaaaaatggatgaagaagtatcttcaatttattagtacattcgttattagacta |
407 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||| ||| | |
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| T |
5845519 |
tcttttacgtttattggaggaactatgatgtgacaatgtgaataacaaaaaatggat---caagtttcttcaattcattagtacattcgttattggacca |
5845423 |
T |
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| Q |
408 |
ttcaaattacgctccaactctctgttttgaatgtgagattacaatccaacgctcctattttacatgttgaatt |
480 |
Q |
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||||||||||| |||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
5845422 |
ttcaaattacgttccaactctcagttttgaatgtgagattatactccaacgctcctattttacatgttgaatt |
5845350 |
T |
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