View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18040_low_9 (Length: 468)
Name: NF18040_low_9
Description: NF18040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18040_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 141 - 451
Target Start/End: Original strand, 12013065 - 12013371
Alignment:
| Q |
141 |
taaggatttaccatttatctaatgagattcctttcctgtcnnnnnnntaaaataagagagattttgagttaactagtctaactatagaaatgattcatgg |
240 |
Q |
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| T |
12013065 |
taaggatttaccatttatctaatgagattcctttcctgtcaaaaa---aaaaaaaaagagattttaagttaactagtctatctttagaaatgattcatgg |
12013161 |
T |
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| Q |
241 |
caacacattatggcgtaatttgattcacgtcaccgaccccattgagtgggaaaagaaaagactttagtttttgttgacattgttcatgtaatacaaacaa |
340 |
Q |
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| T |
12013162 |
caacacattatggtgtaatttgattcatgtcaccgaccccatttagtgggaaaagaaaagactttagtttttgttgacattgttcatgtaatgcaaacaa |
12013261 |
T |
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| Q |
341 |
tatatcaaacaccaattagacatttggagtgtatttttctagcagcttaaggaaatgtctagaaagagtaatacctaaaatcaatattgtatcttacaac |
440 |
Q |
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| T |
12013262 |
tatatcaaacaccaattagacaattggagtctatttttctagcagtttaaggaaatgttaagaaagagt-atacctaaaattaatattgtatcttataac |
12013360 |
T |
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| Q |
441 |
gttttagagtg |
451 |
Q |
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| T |
12013361 |
attttagagtg |
12013371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 11991406 - 11991558
Alignment:
| Q |
29 |
tttgttgaaagagattgtaatgctgtagcacgtagtcttgtcagcttctcactttctg-tggttgtatgctttgggaaggcaaagttcctgaccaaatta |
127 |
Q |
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| T |
11991406 |
tttgttcaaagagattgcaatactgtagcacatagtcttgtcagcttagcactttctgctgggtgtaagctttgggaagccaatgttcctgaccaaatta |
11991505 |
T |
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| Q |
128 |
tggctgctgtttgtaaggatttaccatttatctaatgagattcctttcctgtc |
180 |
Q |
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| T |
11991506 |
tggcttctgtttgtaaggatttaccatttatctaatgaaattcctttcctgtc |
11991558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 193 - 397
Target Start/End: Original strand, 12024514 - 12024713
Alignment:
| Q |
193 |
taagagagattttgagttaactagtctaactatagaaatgattcatggcaacacattatggcgtaatttgattcacgtcaccgaccccattgagtgggaa |
292 |
Q |
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| T |
12024514 |
taagagagattttcagttaactagtctatctttagaaatgattcatgacaacacattatggcatcacttgattcatgtcactggccccatttagtgg--- |
12024610 |
T |
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| Q |
293 |
aagaaaagactttagtttttgttgacattgttcatgtaatacaaacaatatatcaaacaccaattagacatttggagtgtatttttctagcagcttaagg |
392 |
Q |
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| T |
12024611 |
--gaaaagactttagtttttgttgatgttgttcgagaactatagacaagatatcagacaccaattaaacattcagagtctaattttcaagcaatttaaag |
12024708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 196 - 352
Target Start/End: Original strand, 11991588 - 11991733
Alignment:
| Q |
196 |
gagagattttgagttaactagtctaactatagaaatgattcatggcaacacattatggcgtaatttgattcacgtcaccgaccccattgagtgggaaaag |
295 |
Q |
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| T |
11991588 |
gagagattttgagttaacaagtctatcttcagaaatgattcatgg---cacattatgacataatttgattcgcgtcaccgaccccatttagtg-----aa |
11991679 |
T |
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| Q |
296 |
aaaagactttagtttttgttgacattgttcatgtaatacaaacaatatatcaaacac |
352 |
Q |
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| T |
11991680 |
aaaagactttagtttttgttg---tcgttcatgtgatacatacaatatatcaaacac |
11991733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 2090629 - 2090675
Alignment:
| Q |
245 |
acattatggcgtaatttgattcacgtcaccgaccccattgagtggga |
291 |
Q |
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| T |
2090629 |
acattatggcgtaatttgatccatgtacccgaccccattgagtggga |
2090675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 43497657 - 43497599
Alignment:
| Q |
194 |
aagagagattttgagttaactagtctaactatagaaatgattcatggcaacacattatg |
252 |
Q |
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| T |
43497657 |
aagagagaatttgagttaactaatctatctttagaaatgattcatgataacatattatg |
43497599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 17269055 - 17269005
Alignment:
| Q |
245 |
acattatggcgtaatttgattcacgtcaccgaccccattgagtgggaaaag |
295 |
Q |
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| T |
17269055 |
acattatggcgtaatttgatccatgtagccgaccccatttagtgggaaaag |
17269005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 52532682 - 52532632
Alignment:
| Q |
245 |
acattatggcgtaatttgattcacgtcaccgaccccattgagtgggaaaag |
295 |
Q |
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| T |
52532682 |
acattatggcgtaatttgattcatgtagccgaccccacttagtgggaaaag |
52532632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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