View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18041_high_2 (Length: 533)
Name: NF18041_high_2
Description: NF18041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18041_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 6 - 517
Target Start/End: Original strand, 6524415 - 6524926
Alignment:
| Q |
6 |
tggacatcatcatctttgatgcaccagctttgtttgaggaatcatgccatatcatctccatctgatacatagcagaacaaatggtcactgggtatgaatt |
105 |
Q |
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| T |
6524415 |
tggacatcttcatctttgatgcaccagctttgtttgaggagtcatgccatatcatctccatctgatacatagcagaacaaatggtcactgggtatgaatt |
6524514 |
T |
|
| Q |
106 |
atggaatgacacaatattgtagagcttcgagtaataagactacacaataaaaagttacaaataaactttgttccctatcttattgctgatgtttctaggc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6524515 |
atggaatgacacaatattgtagagcttcgagtaataagactacacaataaaaagttacaaataaactttgttccctatcttattgctgatgtttctaggc |
6524614 |
T |
|
| Q |
206 |
tagaaacaaattctaggttactcttgaggtcaatagcaagtactgtcaatagtgtttgttccacctttaaggaagcaatgtttcgagtgaagcagttact |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6524615 |
tagaaacaaattctaggttactcttgaggtcaatagcaagtactgtcaatagtgtttgttccacctttaaggaagcaatgtttcgagtgaagcagttact |
6524714 |
T |
|
| Q |
306 |
gacaactaaatttcattcaataaatcaaccatatgctaattgcttcattcgtcatgctagcaaggattacaatgaacagaaatgctgaagagaaatgaaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6524715 |
gacaactaaatttcattcaataaatcaaccatatgctaattgcttcattcgtcatgctagcaaggattacaatgaacagaaatgctgaagagaaatgaaa |
6524814 |
T |
|
| Q |
406 |
tacatacctctccaacaatcactttgtcgccttcctttacgccacgtttcacgagagacttaaatacaccacaagcctcaaggacattttggaatctttt |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6524815 |
tacatacctctccaacaatcactttgtcgccttcctttacgccacgtttcacgagagacttaaatacaccacaagcctcaaggacattttggaatctttt |
6524914 |
T |
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| Q |
506 |
ctcggaatcaac |
517 |
Q |
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| T |
6524915 |
ctcggaatcaac |
6524926 |
T |
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