View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18041_high_3 (Length: 518)
Name: NF18041_high_3
Description: NF18041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18041_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 14 - 500
Target Start/End: Original strand, 371205 - 371690
Alignment:
| Q |
14 |
cacagacacttttaacgaaatcgaattatgtcacagatttttaacaggatgctgctcccccaaattgttgtcttccattaagactttataagctcattta |
113 |
Q |
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| T |
371205 |
cacagacacttttaacgaaatcgaattatgtcacagatttttaacaggatgctgctcccctaaattgttgtcttccattaagattttataagctcattta |
371304 |
T |
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| Q |
114 |
aaggaatggcaattcgacgggtcctctccccacactaatctatctccgcccaaaaagctctcttctccacttaaattcctttctacaaaaaatttcttct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
371305 |
aaggaatggcaattcgacgggtcctctccccacactaatctatctccgcccaaaaagctctcttctccacttaaattcctttctacaaaaaatttcttct |
371404 |
T |
|
| Q |
214 |
attgttgatagcttcgtaattatttacttgtttgctttctaccttctatcaaactggtttgacttgtctgggaccaacattagagaaacacatgccatga |
313 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
371405 |
attgttgatagcttcctaattatttacttgtttgctttctaccttctatcaaactggtttgacttgtctgggaccaacattagagaaacagatgccatga |
371504 |
T |
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| Q |
314 |
caaattcaaggcaatggtagcaactacagataatgaaagagcaagtatttgaaacactctcgtgcatatgctttaaaatttaaaatggttatcgaactga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
371505 |
caaattcaaggcaatggtagcaactacagataatgaaagagcaagtatttgaaacactctcgtgca-atgctttataatttaaaatggttatcgaactga |
371603 |
T |
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| Q |
414 |
cgaaaactccaactcattgtacaactaccttagatagttgaaccaggacgaaaagttgaatagttctcaaataaccaaaccatatac |
500 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
371604 |
cgaaaactccaactcattgttcaactaccttagatagttgaaccaggacgaaatgttgaatagttctcaaataaccaaaccatatac |
371690 |
T |
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