View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18041_high_6 (Length: 332)
Name: NF18041_high_6
Description: NF18041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18041_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 24222470 - 24222160
Alignment:
| Q |
18 |
cctctttgcattaaccatctgcttttcattagcttttgcacaagtttctgaacaagtttttgacacaaatggaaaccccatttttcctggtggcacattc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24222470 |
cctctttgcattaaccatctgcttttcattagcttttgcacaagtttctgaacaagtttttgacacaaatggaaaccccatttttcctggtggcacattc |
24222371 |
T |
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| Q |
118 |
tatattatgccatcaatctttggagcagctggtggtggattgaggcttggtaagacaaaaaactcaaaatgtccacttactgtacttcaagattattctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24222370 |
tatattatgccatcaatctttggagcagctggtggtggattgaggcttggtaagacaaaaaactcaaaatgtccacttactgtacttcaagattattctg |
24222271 |
T |
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| Q |
218 |
aggttgtcaatggtctgcctgtaaagtttaccaggctagaagcaggccatgatataatctcaacaaacacagcacttgatatcgcatttacaacaaagcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24222270 |
aggttgtcaatggtctgcctgtaaagtttaccaggctagaagcaggccatgatataatctcaacaaacacagcacttgatatcgcatttacaacaaagcc |
24222171 |
T |
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| Q |
318 |
cgtctgtgctg |
328 |
Q |
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|| |||||||| |
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| T |
24222170 |
cgactgtgctg |
24222160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 24275397 - 24275211
Alignment:
| Q |
28 |
ttaaccatctgcttttcattagcttttgcacaagtttctgaacaagtttttgacacaaatggaaaccccatttttcctggtggcacattctatattatgc |
127 |
Q |
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||||||| || |||||||||| ||||| |||||| ||||||||||||| |||||||| ||||||| ||||| ||| |||||||||||||||||||| ||| |
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| T |
24275397 |
ttaaccacctacttttcattatcttttacacaagcttctgaacaagttattgacacacatggaaaacccatgtttgctggtggcacattctatattttgc |
24275298 |
T |
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| Q |
128 |
catcaatctttggagcagctggtggtggattgaggcttggtaagacaaaaaactcaaaatgtccacttactgtacttcaagattatt |
214 |
Q |
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| T |
24275297 |
cagctatctttggagcagcaggtggtggattgaggcttgctaagactggaaactcaaaatgtccatttactgtacttcaagattatt |
24275211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 20460954 - 20460821
Alignment:
| Q |
114 |
attctatattatgccatcaatctttggagcagctggtggtggattgaggcttggtaagacaaaaaactcaaaatgtccacttactgtacttcaagattat |
213 |
Q |
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| T |
20460954 |
attctatgttaagccatctatatttggagctgctggtggtggagtaaagcttggtgaaacaggaaactcatcatgtccacttactgtacttcaagattat |
20460855 |
T |
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| Q |
214 |
tctgaggttgtcaatggtctgcctgtaaagttta |
247 |
Q |
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| T |
20460854 |
tctgaggtcgtcaacggtctcccggtaaaattta |
20460821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 15505207 - 15505276
Alignment:
| Q |
147 |
tggtggtggattgaggcttggtaagacaaaaaactcaaaatgtccacttactgtacttcaagattattct |
216 |
Q |
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| T |
15505207 |
tggtggtgaattgaggcttggtgaaacagaaaattcaacatgtccatttactgtacttcaagattattct |
15505276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 15512397 - 15512466
Alignment:
| Q |
147 |
tggtggtggattgaggcttggtaagacaaaaaactcaaaatgtccacttactgtacttcaagattattct |
216 |
Q |
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| T |
15512397 |
tggtggtgaattgaggcttggtgaaacagaaaattcaacatgtccatttactgtacttcaagattattct |
15512466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 15985236 - 15985167
Alignment:
| Q |
147 |
tggtggtggattgaggcttggtaagacaaaaaactcaaaatgtccacttactgtacttcaagattattct |
216 |
Q |
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| T |
15985236 |
tggtggtgaattgaggcttggtgaaacagaaaattcaacatgtccatttactgtacttcaagattattct |
15985167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 20433703 - 20433627
Alignment:
| Q |
148 |
ggtggtggattgaggcttggtaagacaaaaaactcaaaatgtccacttactgtacttcaagattattctgaggttgt |
224 |
Q |
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| T |
20433703 |
ggtggtggattgaagcttggtaagacaggagactcagaatgtccagttactgtcctacaagatttttctgaggttgt |
20433627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 16328221 - 16328152
Alignment:
| Q |
147 |
tggtggtggattgaggcttggtaagacaaaaaactcaaaatgtccacttactgtacttcaagattattct |
216 |
Q |
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|||||||| ||||||||||||| ||| |||| |||| ||||||| ||||||||||||||||||||||| |
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| T |
16328221 |
tggtggtgaattgaggcttggtgtaacagaaaattcaacatgtccatttactgtacttcaagattattct |
16328152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 16351636 - 16351571
Alignment:
| Q |
151 |
ggtggattgaggcttggtaagacaaaaaactcaaaatgtccacttactgtacttcaagattattct |
216 |
Q |
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|||||||| ||||||||| | || |||| |||| ||||||| ||||||||||||||||||||||| |
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| T |
16351636 |
ggtggattcaggcttggtgaaactgaaaattcaacatgtccatttactgtacttcaagattattct |
16351571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 20401476 - 20401400
Alignment:
| Q |
148 |
ggtggtggattgaggcttggtaagacaaaaaactcaaaatgtccacttactgtacttcaagattattctgaggttgt |
224 |
Q |
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| T |
20401476 |
ggtggtggattgaagcttggtaaaacaggagactcagaatgtccagttactgtcatacaagatttttctgaggttgt |
20401400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 25495323 - 25495169
Alignment:
| Q |
79 |
gacacaaatggaaaccccatttttcctggtggcacattctatattatgccatcaatctttggagcagctggtggtggattgaggcttgg---taagacaa |
175 |
Q |
| |
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||||||||||||||||| ||||| |||||||| | || |||| | |||||| | |||||||||||||| ||||||||| | | |||||| | | ||| |
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| T |
25495323 |
gacacaaatggaaaccctattttccctggtgggagatactatctcatgccacctatctttggagcagcaggtggtggagtaaagcttggtcatgatacag |
25495224 |
T |
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| Q |
176 |
aaaactcaaaatgtccacttactgtacttcaagattattctgaggttgtcaatgg |
230 |
Q |
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||| ||||| ||||||| || | ||| |||||||||||||||||||||| ||||| |
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| T |
25495223 |
aaagctcaacatgtccagttgcagtatttcaagattattctgaggttgtgaatgg |
25495169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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