View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18041_high_8 (Length: 229)
Name: NF18041_high_8
Description: NF18041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18041_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 50593606 - 50593803
Alignment:
| Q |
17 |
agggagctggaggccatgtcactgcctctaaactcaatcgtcactcaagggttccacacacaaagccaccattcacagttggtcagttgaagaaatccat |
116 |
Q |
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| T |
50593606 |
agggagctggcggccatgtcactgcctctaaactcaatcgtcactcaagggttccacacacaaagccaccattcacagttggtcagttgaagaaatccat |
50593705 |
T |
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| Q |
117 |
tccaccgcattgctttgaacgttccatcctcttatcattctcctacgtagtttttgacctttcaatagcctctgttctctacatttcgactacttatt |
214 |
Q |
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| T |
50593706 |
tccaccacattgctttgaacgttccatcctcttatcattctcctacgtagtttttgacctttcaatagcatatgttctctacatttcgactacttatt |
50593803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 1896773 - 1896853
Alignment:
| Q |
42 |
ctctaaactcaatcgtcactcaagggttccacacacaaagccaccattcacagttggtcagttgaagaaatccattccacc |
122 |
Q |
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|||||||||||||| || |||||||||||||| || |||||||| |||||||||||| | ||||||||||||||||||||| |
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| T |
1896773 |
ctctaaactcaatcatctctcaagggttccacgcataaagccacaattcacagttggccggttgaagaaatccattccacc |
1896853 |
T |
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