View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18041_high_9 (Length: 227)
Name: NF18041_high_9
Description: NF18041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18041_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 26991731 - 26991620
Alignment:
| Q |
110 |
gaatcgccacttacatcttcatctcctcccaccttcccttctaaggaagaacactactatccatccaacaagccagtgcattattacatcctcgagccag |
209 |
Q |
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| T |
26991731 |
gaatcgccacttacatcttcatctcctcccaccttcccttctaaggaagaacactactatccatccaacaagccagtgcattattacatcctcgagccag |
26991632 |
T |
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| Q |
210 |
aaccgtcgcttc |
221 |
Q |
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|||||||||||| |
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| T |
26991631 |
aaccgtcgcttc |
26991620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 27006162 - 27006051
Alignment:
| Q |
110 |
gaatcgccacttacatcttcatctcctcccaccttcccttctaaggaagaacactactatccatccaacaagccagtgcattattacatcctcgagccag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| |
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| T |
27006162 |
gaatcgccacttacatcttcatctcctcccaccttcccttctaaggaagaacactactatccatttaacaaaccaatgcattattacatcctcgagccag |
27006063 |
T |
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| Q |
210 |
aaccgtcgcttc |
221 |
Q |
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|||||||||||| |
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| T |
27006062 |
aaccgtcgcttc |
27006051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 26991840 - 26991797
Alignment:
| Q |
1 |
catcttcccatatttttctctgattcttttctttctcttcgaag |
44 |
Q |
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| T |
26991840 |
catcttcccatatttttctctgattcttttctttctcttcgaag |
26991797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 26975786 - 26975846
Alignment:
| Q |
161 |
cactactatccatccaacaagccagtgcattattacatcctcgagccagaaccgtcgcttc |
221 |
Q |
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|||| |||||||| | |||| ||| |||||||| |||||||||||| ||||||||||||| |
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| T |
26975786 |
cactgctatccattccacaaaccaacgcattatttcatcctcgagccggaaccgtcgcttc |
26975846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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