View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18041_low_4 (Length: 354)
Name: NF18041_low_4
Description: NF18041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18041_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 52270703 - 52270364
Alignment:
| Q |
1 |
ttgaggtgattatttctgagttatcttgttttaaatatttcagtcatcttttatcggtcgagcttcaaatcaatttatgccttcttctcaaaagcatgga |
100 |
Q |
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| T |
52270703 |
ttgaggtgattatttctgagttatcttgttttaaatatttcagtcatcttttatcggtcgagcttcaaatcaatttatgccttcttctcaaaagcatgga |
52270604 |
T |
|
| Q |
101 |
tcaagcaaggttcgatcgtcatatatatttgggcgagatgacagcaacagcagaccttcagtgttgatgtcagaggattcttcagatacggtattgacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52270603 |
tcaagcaaggttcgatcgtcatatatatttgggcgagatgacagcaacagcagaccttcagtgttgatgtcagaggattcttcagatacggtattgacta |
52270504 |
T |
|
| Q |
201 |
tcagaaattcgaaaaactagcatggcattaataaccgtaatgctatacaatttttctatgaattatgctagcaaattcatatggatccaactaaatttat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52270503 |
tcagaaattcgaaaaactagcatggcattaataaccgtaatgctatacaatttttctatgaattatgctagcaaattcatatggatccaactaaatttat |
52270404 |
T |
|
| Q |
301 |
gtttagcattcatgatttagtggaatctgtggataatact |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
52270403 |
gtttagcattcatgatttagtggaatctgtggataatact |
52270364 |
T |
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