View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18041_low_5 (Length: 340)

Name: NF18041_low_5
Description: NF18041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18041_low_5
NF18041_low_5
[»] chr4 (6 HSPs)
chr4 (1-328)||(3565342-3565669)
chr4 (9-328)||(3557332-3557651)
chr4 (9-324)||(1686434-1686749)
chr4 (14-127)||(3561304-3561417)
chr4 (244-326)||(3561105-3561187)
chr4 (63-105)||(11982024-11982066)
[»] chr1 (4 HSPs)
chr1 (60-328)||(39379206-39379474)
chr1 (67-125)||(17561094-17561152)
chr1 (57-109)||(4017084-4017136)
chr1 (240-304)||(21855552-21855616)
[»] chr3 (2 HSPs)
chr3 (9-133)||(3625367-3625491)
chr3 (244-315)||(3625575-3625646)
[»] chr7 (26 HSPs)
chr7 (238-328)||(29881091-29881181)
chr7 (14-109)||(29880885-29880980)
chr7 (238-304)||(29867074-29867140)
chr7 (70-126)||(29899044-29899100)
chr7 (57-109)||(18983319-18983371)
chr7 (57-109)||(18997965-18998017)
chr7 (57-109)||(19637584-19637636)
chr7 (38-126)||(29866892-29866980)
chr7 (70-125)||(29106484-29106539)
chr7 (249-304)||(29476509-29476564)
chr7 (241-316)||(29922144-29922219)
chr7 (79-125)||(29431340-29431386)
chr7 (60-109)||(24391074-24391123)
chr7 (80-133)||(29454437-29454490)
chr7 (57-109)||(18953272-18953324)
chr7 (57-101)||(18988129-18988173)
chr7 (70-114)||(29074731-29074775)
chr7 (59-126)||(20058374-20058441)
chr7 (62-109)||(22021051-22021098)
chr7 (72-131)||(29859123-29859182)
chr7 (66-104)||(9807511-9807549)
chr7 (76-126)||(29445988-29446038)
chr7 (238-304)||(29859289-29859355)
chr7 (72-109)||(22036779-22036816)
chr7 (60-97)||(22473492-22473529)
chr7 (249-290)||(29454286-29454327)
[»] chr8 (1 HSPs)
chr8 (57-109)||(27618154-27618206)
[»] chr6 (2 HSPs)
chr6 (53-112)||(19747046-19747105)
chr6 (56-109)||(33568652-33568705)
[»] scaffold0707 (1 HSPs)
scaffold0707 (56-109)||(5046-5099)
[»] scaffold0097 (1 HSPs)
scaffold0097 (56-101)||(16723-16768)
[»] chr2 (1 HSPs)
chr2 (56-101)||(20712884-20712929)
[»] chr5 (2 HSPs)
chr5 (240-304)||(24331068-24331132)
chr5 (58-126)||(42297805-42297873)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 3565342 - 3565669
Alignment:
Q  1 ccaccggaacttttaaagtggttgcgtcacgttacattcatgatcatttgaaaagtgaggtgagagttttcagtttaggtgataatgtttggagaaatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3565342 ccaccggaacttttaaagtggttgcgtcacgttacattcatgatcatttgaaaagcgaggtgagagttttcagtttaggtgataatgtttggagaaatat 3565441  T
Q  101 tgaaagtttcccggctgttcctcttcgtttggattatcaaggatttgggcatactgatgtgtttcttaatggcactcttaactggttggctgttcacaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3565442 tgaaagtttcccggctgttcctcttcgtttggattatcaaggatttgggcatactgatgtgtttcttaatggcactcttaactggttggctgttcacaac 3565541  T
Q  201 gacatcccgatcacttggtttggtgatccggcggtggaggatattactgttgagcagattgttattgtttcacttgatttagggactgagtcatacaaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3565542 gacatcccgatcacttggtttggtgatccggcggtggaggatattactgttgagcagattgttattgtttcacttgatttagggactgagtcatacaaac 3565641  T
Q  301 aatatcggttgcctctgggttttgatga 328  Q
    ||||||||||||||||||||||||||||    
T  3565642 aatatcggttgcctctgggttttgatga 3565669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 328
Target Start/End: Original strand, 3557332 - 3557651
Alignment:
Q  9 acttttaaagtggttgcgtcacgttacattcatgatcatttgaaaagtgaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagtt 108  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3557332 acttttaaagtggttgcatcacgttacattcgtgatcgtttgacaagtgaggttagagttttcagtttaggtgataatgtttggagaaatattgaaagtt 3557431  T
Q  109 tcccggctgttcctcttcgtttggattatcaaggatttgggcatactgatgtgtttcttaatggcactcttaactggttggctgttcacaatgacatccc 208  Q
    |||| | ||| | ||||  |||| ||||| ||||||||| |||||||||||||||||||||  ||||| |||||||||||||| || |||||||||||||    
T  3557432 tccctgttgtccatcttaatttgtattatgaaggatttgagcatactgatgtgtttcttaacagcacttttaactggttggctatttacaatgacatccc 3557531  T
Q  209 gatcacttggt-ttggtgatccggcggtggaggatattactgttgagcagattgttattgtttcacttgatttagggactgagtcatacaaacaatatcg 307  Q
    ||||||||||| |||||  ||| |   |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  3557532 gatcacttggtattggt-ttcctgatctggaggatattactgtcgagcagattgttattgtttcacttgatttggggactgagtcatacaaccaatatcg 3557630  T
Q  308 gttgcctctgggttttgatga 328  Q
    |||||||| ||||||||||||    
T  3557631 gttgcctcggggttttgatga 3557651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 1686749 - 1686434
Alignment:
Q  9 acttttaaagtggttgcgtcacgttacattcatgatcatttgaaaagtgaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagtt 108  Q
    ||||||||||||||||||||| |||| | || |||| |||||| | || |  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1686749 acttttaaagtggttgcgtcatgttaaagtcgtgattatttgacatgttatatgagagttttcagtttaggtgataatgtttggagaaatattgaaagtt 1686650  T
Q  109 tcccggctgttcctcttcgtttggattatcaaggatttgggcatactgatgtgtttcttaatggcactcttaactggttggctgttcacaatgacatccc 208  Q
    |||||| | ||||||| ||| || ||| || ||  | || | || |||||||||||||||||||||||||||| |||||||||||||| |||||| ||||    
T  1686649 tcccggttattcctctccgtgtgaattttcgagactctgagtatgctgatgtgtttcttaatggcactcttaattggttggctgttcaaaatgacgtccc 1686550  T
Q  209 gatcacttggtttggtgatccggcggtggaggatattactgttgagcagattgttattgtttcacttgatttagggactgagtcatacaaacaatatcgg 308  Q
     |||||| | | | || ||| ||||||| |||||||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||||| |||||||||    
T  1686549 aatcactcgttatagtcatctggcggtgaaggatattactgttgaacagattgttattgtttcacttaatttggggactgagacatacaatcaatatcgg 1686450  T
Q  309 ttgcctctgggttttg 324  Q
    ||||||| ||||||||    
T  1686449 ttgcctcagggttttg 1686434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 3561417 - 3561304
Alignment:
Q  14 taaagtggttgcgtcacgttacattcatgatcatttgaaaagtgaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagtttcccg 113  Q
    |||||||||||||||| ||||||||| |||||| ||||  || |||||||||| |||| |||| |||||||||||||||||||||||||||||||| ||     
T  3561417 taaagtggttgcgtcatgttacattcgtgatcaattgactagcgaggtgagagctttcggttttggtgataatgtttggagaaatattgaaagttttcct 3561318  T
Q  114 gctgttcctcttcg 127  Q
      ||||||||||||    
T  3561317 attgttcctcttcg 3561304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 3561187 - 3561105
Alignment:
Q  244 ttactgttgagcagattgttattgtttcacttgatttagggactgagtcatacaaacaatatcggttgcctctgggttttgat 326  Q
    |||| ||||||||| ||||||||||||| |||||| | || |||||| ||||||| ||||||  |||||||| ||||||||||    
T  3561187 ttacagttgagcagtttgttattgtttcgcttgatctgggaactgagacatacaatcaatatttgttgcctcggggttttgat 3561105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 11982066 - 11982024
Alignment:
Q  63 agagttttcagtttaggtgataatgtttggagaaatattgaaa 105  Q
    |||||||| |||||||| ||||||||||||||||| |||||||    
T  11982066 agagtttttagtttaggcgataatgtttggagaaagattgaaa 11982024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 60 - 328
Target Start/End: Complemental strand, 39379474 - 39379206
Alignment:
Q  60 gtgagagttttcagtttaggtgataatgtttggagaaatattgaaagtttcccggctgttcctcttcgtttggattatcaaggatttgggcatactgatg 159  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||  ||  |||  | ||  ||||   ||||||| ||    
T  39379474 gtgagagttttcagtttgggtgataatgtttggagaaatattgaaagtttcccggttgttcctctttattgtgatgttgaacaatttcatcatactggtg 39379375  T
Q  160 tgtttcttaatggcactcttaactggttggctgttcacaatgacatcccgatcacttggtttggtgatccggcggtggaggatattactgttgagcagat 259  Q
    |||||||||||||||||||||| ||||||||| ||||  ||||   ||||||||||   | | ||||||  | |  | |  ||||||  || ||||||||    
T  39379374 tgtttcttaatggcactcttaattggttggctattcaagatgaagacccgatcactcattattgtgatctagagtggaacaatattaaggtcgagcagat 39379275  T
Q  260 tgttattgtttcacttgatttagggactgagtcatacaaacaatatcggttgcctctgggttttgatga 328  Q
    ||||||||||||||||||||| ||||||||  ||||||| || ||||||||||||  ||||||||||||    
T  39379274 tgttattgtttcacttgatttggggactgaaacatacaaccagtatcggttgccttggggttttgatga 39379206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 17561152 - 17561094
Alignment:
Q  67 ttttcagtttaggtgataatgtttggagaaatattgaaagtttcccggctgttcctctt 125  Q
    |||| ||||| |||||||| ||||||||| ||||| |||||||||||| ||||||||||    
T  17561152 ttttaagtttgggtgataacgtttggagagatattcaaagtttcccggttgttcctctt 17561094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 4017136 - 4017084
Alignment:
Q  57 gaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 109  Q
    ||||||| |||| ||| ||| |||||| ||||||||||||||||||| |||||    
T  4017136 gaggtgaaagttctcaatttgggtgatgatgtttggagaaatattgacagttt 4017084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 21855616 - 21855552
Alignment:
Q  240 gatattactgttgagcagattgttattgtttcacttgatttagggactgagtcatacaaacaata 304  Q
    |||||||||||||| ||| |||| |||||||| |||||||| | ||| ||| ||||||| |||||    
T  21855616 gatattactgttgaccagtttgtgattgtttctcttgatttggagacggagacatacaatcaata 21855552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 3625367 - 3625491
Alignment:
Q  9 acttttaaagtggttgcgtcacgttacattcatgatcatttgaaaagtgaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagtt 108  Q
    |||| ||||||||| | ||| |||||||||| |||||| || | ||  ||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  3625367 acttataaagtggtggtgtcccgttacattcgtgatcaattaacaaacgaggtgaaagttctcagttttggtgataatgtttggagaaatattgaaagtt 3625466  T
Q  109 tcccggctgttcctcttcgtttgga 133  Q
    ||| | |  ||||||||| ||||||    
T  3625467 tccggacaattcctcttcatttgga 3625491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 315
Target Start/End: Original strand, 3625575 - 3625646
Alignment:
Q  244 ttactgttgagcagattgttattgtttcacttgatttagggactgagtcatacaaacaatatcggttgcctc 315  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||| ||||||| || ||| || ||||||    
T  3625575 ttactgttgagcaatttgttattgtttcacttgatttggggactgagacatacaatcactattggctgcctc 3625646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 238 - 328
Target Start/End: Original strand, 29881091 - 29881181
Alignment:
Q  238 aggatattactgttgagcagattgttattgtttcacttgatttagggactgagtcatacaaacaatatcggttgcctctgggttttgatga 328  Q
    |||||||||||||||| ||  |||||||||||||||||||||| ||||||||| ||||||| ||||||||  |||||| | ||||||||||    
T  29881091 aggatattactgttgaccaatttgttattgtttcacttgatttggggactgagacatacaatcaatatcgactgcctccgagttttgatga 29881181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 29880885 - 29880980
Alignment:
Q  14 taaagtggttgcgtcacgttacattcatgatcatttgaaaagtgaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 109  Q
    ||||||||| ||||  |||||| ||| |||||| |||||||| |||||||||||| ||| | | |||||| |||||||||||||||||||||||||    
T  29880885 taaagtggtagcgttccgttaccttcgtgatcaattgaaaagcgaggtgagagttctcaatcttggtgatgatgtttggagaaatattgaaagttt 29880980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 29867074 - 29867140
Alignment:
Q  238 aggatattactgttgagcagattgttattgtttcacttgatttagggactgagtcatacaaacaata 304  Q
    |||||||||||||||| ||| |||||||||||||||||||||| |||||||||  |||||| |||||    
T  29867074 aggatattactgttgaccagtttgttattgtttcacttgatttggggactgagaaatacaatcaata 29867140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 29899044 - 29899100
Alignment:
Q  70 tcagtttaggtgataatgtttggagaaatattgaaagtttcccggctgttcctcttc 126  Q
    ||||||| |||||||||||||||||| |||||||||||||||| | |||||||||||    
T  29899044 tcagttttggtgataatgtttggagagatattgaaagtttcccagttgttcctcttc 29899100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 18983371 - 18983319
Alignment:
Q  57 gaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 109  Q
    |||||||||||||||| |||||| ||||||||||||||| ||||| |||||||    
T  18983371 gaggtgagagttttcaatttaggcgataatgtttggagacatattcaaagttt 18983319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 18998017 - 18997965
Alignment:
Q  57 gaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 109  Q
    |||||||||||||||| |||||| ||||||||||||||| ||||| |||||||    
T  18998017 gaggtgagagttttcaatttaggcgataatgtttggagacatattcaaagttt 18997965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 19637636 - 19637584
Alignment:
Q  57 gaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 109  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||| |||||||    
T  19637636 gaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttt 19637584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 126
Target Start/End: Original strand, 29866892 - 29866980
Alignment:
Q  38 tcatgatcatttgaaaagtgaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagtttcccggctgttcctcttc 126  Q
    ||||| |||||||||||  || ||||||||| ||| ||| |||||| ||  ||||||||||||||||||||| || || ||||||||||    
T  29866892 tcatgctcatttgaaaaacgatgtgagagttctcaatttcggtgatgatcgttggagaaatattgaaagttttcctgcggttcctcttc 29866980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 29106484 - 29106539
Alignment:
Q  70 tcagtttaggtgataatgtttggagaaatattgaaagtttcccggctgttcctctt 125  Q
    ||||||| |||||||||||||||||| || ||||||||||||||| || |||||||    
T  29106484 tcagttttggtgataatgtttggagagatgttgaaagtttcccggttgatcctctt 29106539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 29476564 - 29476509
Alignment:
Q  249 gttgagcagattgttattgtttcacttgatttagggactgagtcatacaaacaata 304  Q
    ||||||||| |||||||||||||||| |||||||| |||||| ||||||| |||||    
T  29476564 gttgagcagtttgttattgtttcactcgatttaggaactgagacatacaatcaata 29476509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 29922219 - 29922144
Alignment:
Q  241 atattactgttgagcagattgttattgtttcacttgatttagggactgagtcatacaaacaatatcggttgcctct 316  Q
    ||||||| ||||| ||  ||||||| ||||| |||||||||||||| ||| ||||||| ||||||| |||||||||    
T  29922219 atattacagttgaacattttgttatcgtttctcttgatttagggacggagacatacaatcaatatctgttgcctct 29922144  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 29431386 - 29431340
Alignment:
Q  79 gtgataatgtttggagaaatattgaaagtttcccggctgttcctctt 125  Q
    ||||||||||||||||| |||||||||||||||| | ||||||||||    
T  29431386 gtgataatgtttggagagatattgaaagtttccctgttgttcctctt 29431340  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 24391074 - 24391123
Alignment:
Q  60 gtgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 109  Q
    ||||||||||| ||||| ||||||||| |||||||||||||| |||||||    
T  24391074 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttt 24391123  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 29454490 - 29454437
Alignment:
Q  80 tgataatgtttggagaaatattgaaagtttcccggctgttcctcttcgtttgga 133  Q
    |||||||||||||||| |||||||||||||||| | || |||||||| ||||||    
T  29454490 tgataatgtttggagagatattgaaagtttccctgttgctcctcttcatttgga 29454437  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 18953324 - 18953272
Alignment:
Q  57 gaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 109  Q
    |||||||||||||||| ||| || ||||||||||||||| ||||| |||||||    
T  18953324 gaggtgagagttttcaattttggcgataatgtttggagacatattcaaagttt 18953272  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 18988173 - 18988129
Alignment:
Q  57 gaggtgagagttttcagtttaggtgataatgtttggagaaatatt 101  Q
    |||||||||||||||| |||||| ||||||||||||||| |||||    
T  18988173 gaggtgagagttttcaatttaggcgataatgtttggagacatatt 18988129  T

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Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 29074731 - 29074775
Alignment:
Q  70 tcagtttaggtgataatgtttggagaaatattgaaagtttcccgg 114  Q
    ||||||| |||||||||||||||||| || |||||||||||||||    
T  29074731 tcagttttggtgataatgtttggagagatgttgaaagtttcccgg 29074775  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 20058441 - 20058374
Alignment:
Q  59 ggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagtttcccggctgttcctcttc 126  Q
    ||||| |||||| ||||||| ||||||| | |||||||||||||||| |||||| ||  |||||||||    
T  20058441 ggtgaaagtttttagtttagctgataatttatggagaaatattgaaaatttccctgccattcctcttc 20058374  T

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Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 22021051 - 22021098
Alignment:
Q  62 gagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 109  Q
    |||||| || ||||| || |||||||||||||||||||||||||||||    
T  22021051 gagagtatttagtttgggcgataatgtttggagaaatattgaaagttt 22021098  T

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Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 29859123 - 29859182
Alignment:
Q  72 agtttaggtgataatgtttggagaaatattgaaagtttcccggctgttcctcttcgtttg 131  Q
    ||||| |||||||| ||||||||| |||||||||||||||||| || |||| ||| ||||    
T  29859123 agtttgggtgataacgtttggagagatattgaaagtttcccggttgatcctattcttttg 29859182  T

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Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 9807511 - 9807549
Alignment:
Q  66 gttttcagtttaggtgataatgtttggagaaatattgaa 104  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  9807511 gttttcagtttgggtgataatgtttggagagatattgaa 9807549  T

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Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 29446038 - 29445988
Alignment:
Q  76 taggtgataatgtttggagaaatattgaaagtttcccggctgttcctcttc 126  Q
    |||||||||||||||||||| | ||| |||||||||| | |||||||||||    
T  29446038 taggtgataatgtttggagacagattcaaagtttccccgttgttcctcttc 29445988  T

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Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 29859289 - 29859355
Alignment:
Q  238 aggatattactgttgagcagattgttattgtttcacttgatttagggactgagtcatacaaacaata 304  Q
    ||||||||||||| || ||  |||||||||||||||||||||| |||| |||  ||||||| |||||    
T  29859289 aggatattactgtcgaacaatttgttattgtttcacttgatttggggagtgaaacatacaatcaata 29859355  T

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Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 22036779 - 22036816
Alignment:
Q  72 agtttaggtgataatgtttggagaaatattgaaagttt 109  Q
    ||||| || |||||||||||||||||||||||||||||    
T  22036779 agtttgggcgataatgtttggagaaatattgaaagttt 22036816  T

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Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 22473529 - 22473492
Alignment:
Q  60 gtgagagttttcagtttaggtgataatgtttggagaaa 97  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  22473529 gtgagagtcttcagtttgggtgataatgtttggagaaa 22473492  T

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Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 29454327 - 29454286
Alignment:
Q  249 gttgagcagattgttattgtttcacttgatttagggactgag 290  Q
    ||||||||| |||||||| ||||||||||||| |||||||||    
T  29454327 gttgagcagtttgttattatttcacttgatttggggactgag 29454286  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 27618154 - 27618206
Alignment:
Q  57 gaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 109  Q
    ||||||| ||||||||| |||||||||||||||||||||  ||||||| ||||    
T  27618154 gaggtgaaagttttcaggttaggtgataatgtttggagatgtattgaaggttt 27618206  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 19747105 - 19747046
Alignment:
Q  53 aagtgaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagtttccc 112  Q
    |||| |||| ||| ||||||||||| ||||||||  ||||||||||||||| ||||||||    
T  19747105 aagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccc 19747046  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 33568652 - 33568705
Alignment:
Q  56 tgaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 109  Q
    ||||||| ||||||||||||| ||||||| |  ||||||||||||| |||||||    
T  33568652 tgaggtgcgagttttcagtttgggtgatagttgttggagaaatattcaaagttt 33568705  T

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Target: scaffold0707 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 5046 - 5099
Alignment:
Q  56 tgaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 109  Q
    ||||||| ||||||||||||| ||||||| |  ||||||||||||| |||||||    
T  5046 tgaggtgcgagttttcagtttgggtgatagttgttggagaaatattcaaagttt 5099  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 16768 - 16723
Alignment:
Q  56 tgaggtgagagttttcagtttaggtgataatgtttggagaaatatt 101  Q
    |||||| |||||||||| ||| || |||||||||||||||||||||    
T  16768 tgaggtcagagttttcactttgggcgataatgtttggagaaatatt 16723  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 20712929 - 20712884
Alignment:
Q  56 tgaggtgagagttttcagtttaggtgataatgtttggagaaatatt 101  Q
    |||||| |||||||||| ||| || |||||||||||||||||||||    
T  20712929 tgaggtcagagttttcactttgggcgataatgtttggagaaatatt 20712884  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 24331132 - 24331068
Alignment:
Q  240 gatattactgttgagcagattgttattgtttcacttgatttagggactgagtcatacaaacaata 304  Q
    |||||||||||||| ||| |||| |||||||| |||||||| | ||| ||| ||||||| |||||    
T  24331132 gatattactgttgaccagtttgtgattgtttctcttgatttggagacggagacatacaatcaata 24331068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 42297805 - 42297873
Alignment:
Q  58 aggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagtttcccggctgttcctcttc 126  Q
    |||||||||| || ||||| |  |||||||||||||||| |||| ||||||| ||||  ||||||||||    
T  42297805 aggtgagagtctttagtttggaagataatgtttggagaactattcaaagttttccggtagttcctcttc 42297873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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