View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18041_low_7 (Length: 272)

Name: NF18041_low_7
Description: NF18041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18041_low_7
NF18041_low_7
[»] chr4 (7 HSPs)
chr4 (8-272)||(26991925-26992193)
chr4 (38-272)||(26997154-26997387)
chr4 (38-238)||(20275866-20276068)
chr4 (123-272)||(54687660-54687808)
chr4 (114-216)||(17365705-17365808)
chr4 (106-272)||(54678540-54678707)
chr4 (103-197)||(52311287-52311381)
[»] chr1 (2 HSPs)
chr1 (38-272)||(40274361-40274595)
chr1 (38-272)||(40279150-40279383)
[»] chr5 (4 HSPs)
chr5 (38-272)||(19779955-19780188)
chr5 (37-272)||(19783203-19783436)
chr5 (38-203)||(19479514-19479677)
chr5 (103-238)||(16633287-16633423)
[»] chr7 (4 HSPs)
chr7 (38-272)||(39865380-39865611)
chr7 (106-272)||(33190303-33190467)
chr7 (110-272)||(26617742-26617903)
chr7 (40-87)||(33190462-33190509)
[»] chr3 (4 HSPs)
chr3 (38-233)||(39875721-39875906)
chr3 (41-138)||(16221559-16221656)
chr3 (38-135)||(39872827-39872924)
chr3 (155-272)||(8832533-8832649)
[»] chr2 (1 HSPs)
chr2 (104-155)||(34111056-34111107)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 26991925 - 26992193
Alignment:
Q  8 aattaaaaaatatcatataaactacgaatatgttatgaaataatgacttactggatgtccattcttaagtct--tccaccttgttataactcccactttc 105  Q
    ||||||||||||||||| |||| | |||||||||||||||||||||| || ||||||| |||||||||||||  ||||||||| ||||||||||||||||    
T  26991925 aattaaaaaatatcataaaaacaatgaatatgttatgaaataatgacctagtggatgttcattcttaagtctcttccaccttgctataactcccactttc 26992024  T
Q  106 caccttcctataactttcattagtaagtgaatagttagttgaccttaattgccttgatcactaacttattcatcttgtgtactataaatagggct--tat 203  Q
    ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||  |||    
T  26992025 caccttcctataaatctcattagtaagtgaatagttagtggaccttaattgccttgatcactaacttattcatcccgtgtactataaatagggctcatat 26992124  T
Q  204 tatattgcaaagatatacttgtgaaaagaataataatactaagtgctttcatcttctctttcctcttct 272  Q
    ||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||    
T  26992125 tatattgcaaagatatacttgtgaagagaataataatacaaagtactttcatcttctctttcctcttct 26992193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 38 - 272
Target Start/End: Original strand, 26997154 - 26997387
Alignment:
Q  38 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaat 137  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26997154 tgttatgaaataatgacttagtggatgttcatccttaagtcttccaccttgctataactcccactttccaccttcctataactctcattagtaagtgaat 26997253  T
Q  138 agttagttgaccttaattgccttgatcactaacttattcatcttgtgtactataaatagggct--tattatattgcaaagatatacttgtgaaaagaata 235  Q
    ||| |||  |||||||| || |||| |||||||||| ||||||||||||||||||||||| ||  |||||||||||||||| ||||||||||| ||   |    
T  26997254 agtcagtgaaccttaatagctttgaacactaacttactcatcttgtgtactataaataggactcatattatattgcaaagacatacttgtgaagag---a 26997350  T
Q  236 ataatactaagtgctttcatcttctctttcctcttct 272  Q
    ||||||| |||||||||||||||||| || |||||||    
T  26997351 ataatacaaagtgctttcatcttctcctttctcttct 26997387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 238
Target Start/End: Original strand, 20275866 - 20276068
Alignment:
Q  38 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaat 137  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||  |||||||| || |||||||||||||||||||| |||||||||||||||    
T  20275866 tgttatgaaataatgacttagtggatgtccatccttaagtcttccaccttcctataactctcattttccaccttcctataacttccattagtaagtgaat 20275965  T
Q  138 agttagttgaccttaattgccttgatcactaacttattcatcttgtgtactataaatagggct--tattatattgcaaagatatacttgtgaaaagaata 235  Q
    ||||||| |||||||| ||||||||||||| ||||| ||||||| ||||||||||||||| ||  |||| ||||| ||||| | || |||||| ||||||    
T  20275966 agttagtggaccttaactgccttgatcactcacttactcatcttatgtactataaataggactcatattgtattgtaaagacacacatgtgaacagaata 20276065  T
Q  236 ata 238  Q
    |||    
T  20276066 ata 20276068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 272
Target Start/End: Complemental strand, 54687808 - 54687660
Alignment:
Q  123 cattagtaagtgaatagttagttgaccttaattgccttgatcactaacttattcatcttgtgtactataaataggg--cttattatattgcaaagatata 220  Q
    |||||||||||||||| ||||  ||||| ||||  |||||||||| ||||| ||||||||| ||||||||||||||  | |||| ||||  ||||||| |    
T  54687808 cattagtaagtgaataattaggggacctcaattttcttgatcacttacttactcatcttgtatactataaatagggttcatattgtattataaagataca 54687709  T
Q  221 cttgtgaaaagaataataatactaagtgctttcatcttctctttcctcttct 272  Q
    |||||||| ||   |||||||| ||||| |||||||||||| ||||||||||    
T  54687708 cttgtgaagag---aataatacaaagtgatttcatcttctccttcctcttct 54687660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 114 - 216
Target Start/End: Original strand, 17365705 - 17365808
Alignment:
Q  114 tataactttcattagtaagtgaatagttagttgaccttaattgccttgatcactaacttattcatcttgtgtactataaatagggct-tattatattgca 212  Q
    |||||| ||||||||| |||||||||||||| |||||||||| | ||||||||| ||||| ||||||||||| ||||||||| |||| ||||||| || |    
T  17365705 tataaccttcattagtgagtgaatagttagtggaccttaatttctttgatcactcacttactcatcttgtgtcctataaataaggctctattatagtgta 17365804  T
Q  213 aaga 216  Q
    ||||    
T  17365805 aaga 17365808  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 272
Target Start/End: Complemental strand, 54678707 - 54678540
Alignment:
Q  106 caccttcctataactttcattagtaagtgaatagttagttgaccttaattgccttgat--cactaacttattcatcttgtgtactataaatagggct--t 201  Q
    ||||||||||||||   | ||| ||||||||||||| || |||||||||| | |||||  |||| ||||| |||||||||||| |||||||||| ||  |    
T  54678707 caccttcctataacccccgttattaagtgaatagttggtggaccttaatttcattgatcacacttacttactcatcttgtgtattataaataggactcat 54678608  T
Q  202 attatattgcaaagatatacttgtgaaaagaataataatactaagtgctttcatcttctctttcctcttct 272  Q
    ||||||||| |||||||   ||||||| ||||||||||    ||||| |||||||||||| ||||||||||    
T  54678607 attatattgtaaagatacgtttgtgaagagaataataa---aaagtgttttcatcttctccttcctcttct 54678540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 52311381 - 52311287
Alignment:
Q  103 ttccaccttcctataactttcattagtaagtgaatagttagttgaccttaattgccttgatcactaacttattcatcttgtgtactataaatagg 197  Q
    |||||||||||||||||    ||| || |||||||||||||| |||||||||| | ||||||||| ||||| ||||||||||| |||||||||||    
T  52311381 ttccaccttcctataacccctattggtgagtgaatagttagtggaccttaatttctttgatcactcacttagtcatcttgtgtcctataaatagg 52311287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 38 - 272
Target Start/End: Complemental strand, 40274595 - 40274361
Alignment:
Q  38 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtg-aa 136  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||| ||| ||||||| |||||||  |||||||||||| ||    
T  40274595 tgttatgaaataatgacttagtggatgtccatccttaagtcttccaccttattataacttccatttttcaccttcttataactcccattagtaagtgaaa 40274496  T
Q  137 tagttagttgaccttaattgccttgatcactaacttattcatcttgtgtactataaatagggct--tattatattgcaaagatatacttgtgaaaagaat 234  Q
    |||||||| ||| |||||||||||||||||| ||||| |||||||||||| |||||||||||||  |||| ||||||||||| | ||||||||| ||       
T  40274495 tagttagtggactttaattgccttgatcactcacttactcatcttgtgtattataaatagggctaatattgtattgcaaagacacacttgtgaagag--- 40274399  T
Q  235 aataatactaagtgctttcatcttctctttcctcttct 272  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  40274398 aataatacaaagtgctttcatcttctccttcctcttct 40274361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 38 - 272
Target Start/End: Complemental strand, 40279383 - 40279150
Alignment:
Q  38 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaat 137  Q
    |||||||||||||||| |   ||||||||||| |||||||||||||||||  ||||||| ||| |||||||||||||||||||  |||||||||||||||    
T  40279383 tgttatgaaataatgattcggtggatgtccatccttaagtcttccaccttactataacttccattttccaccttcctataactcccattagtaagtgaat 40279284  T
Q  138 agttagttgaccttaattgccttgatcactaacttattcatcttgtgtactataaataggg--cttattatattgcaaagatatacttgtgaaaagaata 235  Q
    ||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||  | |||| ||||||||||| | | ||||||| ||||||    
T  40279283 agttagtggaccttaattgccttgatcactcacttactcatcttgtgtactataaatagggttcatattgtattgcaaagacacatttgtgaagagaata 40279184  T
Q  236 ataatactaagtgctttcatcttctctttcctcttct 272  Q
    || |||  ||||| |||||||||||| || |||||||    
T  40279183 at-ata--aagtgttttcatcttctcctttctcttct 40279150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 272
Target Start/End: Complemental strand, 19780188 - 19779955
Alignment:
Q  38 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaat 137  Q
    |||||||||||||||||||| | ||||||||| ||||||||| |||||||  ||||||||||| |||| |||||||||||||| ||||||||||||||||    
T  19780188 tgttatgaaataatgacttagttgatgtccatccttaagtctcccaccttcctataactcccattttctaccttcctataactctcattagtaagtgaat 19780089  T
Q  138 agttagttgaccttaattgccttgatcactaacttattcatcttgtgtactataaatagggct--tattatattgcaaagatatacttgtgaaaagaata 235  Q
    ||||||| |||||||||| ||||||||||| ||||| || |||||||||||||||||||||||  |||| |||| |||||| | |||  |||| ||   |    
T  19780088 agttagtggaccttaattaccttgatcactcacttactcgtcttgtgtactataaatagggctcatattgtattacaaagacacactcttgaagag---a 19779992  T
Q  236 ataatactaagtgctttcatcttctctttcctcttct 272  Q
    ||||||| ||||||||| |||||||| ||||||||||    
T  19779991 ataatacaaagtgcttttatcttctcattcctcttct 19779955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 37 - 272
Target Start/End: Complemental strand, 19783436 - 19783203
Alignment:
Q  37 atgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaa 136  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||  |||||||| || |||| |||||||||||||| |||||||||||||||    
T  19783436 atgttatgaaataatgacttagtggatgtccatccttaagtcttccacctttctataactctcattttctaccttcctataactctcattagtaagtgaa 19783337  T
Q  137 tagttagttgaccttaattgccttgatcactaacttattcatcttgtgtactataaatagggct--tattatattgcaaagatatacttgtgaaaagaat 234  Q
    |||||||| || ||||||||| || |||||| ||||| |||||||||||||||||||||| |||  |||| || |||||||| | |||  |||| ||       
T  19783336 tagttagtggaacttaattgctttcatcactcacttactcatcttgtgtactataaatagtgctcatattgta-tgcaaagacacactcttgaagag--- 19783241  T
Q  235 aataatactaagtgctttcatcttctctttcctcttct 272  Q
    |||||||| ||||||||| |||||||| || |||||||    
T  19783240 aataatacaaagtgcttttatcttctcctttctcttct 19783203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 38 - 203
Target Start/End: Complemental strand, 19479677 - 19479514
Alignment:
Q  38 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaat 137  Q
    |||||||||||||||||||  |||||||  || |||||||||| ||||||  ||||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  19479677 tgttatgaaataatgactttgtggatgt--atccttaagtctttcaccttcctataacttccattttccaccttcctataactctcattagtaagtgaat 19479580  T
Q  138 agttagttgaccttaattgccttgatcactaacttattcatcttgtgtactataaatagggcttat 203  Q
    ||||||| ||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||    
T  19479579 agttagtggaccttaattgccttgatcactcgcttactcatcttgtgtactataaatagggcttat 19479514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 238
Target Start/End: Complemental strand, 16633423 - 16633287
Alignment:
Q  103 ttccaccttcctataactttcattagtaagtgaatagttagttgaccttaattgccttgatcactaacttattcatcttgtgtactataaatagggct-- 200  Q
    |||||||||||||||||   ||||||  |||||||||||||| |||||||||| | ||||||| | ||||| ||| ||||||| ||||||||||||||      
T  16633423 ttccaccttcctataaccc-cattagcgagtgaatagttagtggaccttaattactttgatcattcacttactcaacttgtgtcctataaatagggctca 16633325  T
Q  201 tattatattgcaaagatatacttgtgaaaagaataata 238  Q
    |||| ||||||||||| |  |||||||| |||||||||    
T  16633324 tattgtattgcaaagacacgcttgtgaagagaataata 16633287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 38 - 272
Target Start/End: Original strand, 39865380 - 39865611
Alignment:
Q  38 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaat 137  Q
    |||||||||||||||||||| ||||||||||| |||||||||| ||||||  |||||||   | |||| ||||| ||||||||  |||||||||||||||    
T  39865380 tgttatgaaataatgacttagtggatgtccatccttaagtctttcaccttcctataactttaattttctacctttctataact--cattagtaagtgaat 39865477  T
Q  138 agttagttgaccttaattgccttgatcactaacttattcatcttgtgtactataaatagggct--tattatattgcaaagatatacttgtgaaaagaata 235  Q
    ||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||  |||  ||||||||||| | |||  |||| ||   |    
T  39865478 agttagtggaccttaattgtcttgatcactcacttactcatcttgtgtactataaatagggctcatatcgtattgcaaagacacactcttgaagag---a 39865574  T
Q  236 ataatactaagtgctttcatcttctctttcctcttct 272  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  39865575 ataatacaaagtgctttcatcttctccttcctcttct 39865611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 106 - 272
Target Start/End: Complemental strand, 33190467 - 33190303
Alignment:
Q  106 caccttcctataactttcattagtaagtgaatagttagttgaccttaattgccttgatcactaacttattcatcttgtgtactataaatagggct--tat 203  Q
    ||||||||||||| || |||| ||||||||||||||| | ||||||| |||||||||||||| ||||| |||||||||||| ||| |||||| ||  |||    
T  33190467 caccttcctataatttccattggtaagtgaatagttactggaccttagttgccttgatcactcacttactcatcttgtgtattat-aataggtctcatat 33190369  T
Q  204 tatattgcaaagatatacttgtgaaaagaataataatactaagtgctttcatcttctctttcctcttct 272  Q
    | ||||||||||| | ||||||||| ||   |||||||| |||||||||||||||||| ||||||||||    
T  33190368 tgtattgcaaagacacacttgtgaagag---aataatacaaagtgctttcatcttctccttcctcttct 33190303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 110 - 272
Target Start/End: Complemental strand, 26617903 - 26617742
Alignment:
Q  110 ttcctataactttcattagtaagtgaatagttagttgaccttaattgccttgatcactaacttattcatcttgtgtactataaatagggct--tattata 207  Q
    ||||||||||   ||||| | |||||||||||||| ||||||||||  |||||||||| ||||||||||||||  | ||||||||||||||  ||||  |    
T  26617903 ttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgaatcctataaatagggctcatattgaa 26617804  T
Q  208 ttgcaaagatatacttgtgaaaagaataataatactaagtgctttcatcttctctttcctcttct 272  Q
    ||| ||||| | ||||||||| ||   |||||||| ||||| |||||||||||  ||||||||||    
T  26617803 ttgtaaagacacacttgtgaagag---aataatacaaagtgttttcatcttcttcttcctcttct 26617742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 33190509 - 33190462
Alignment:
Q  40 ttatgaaataatgacttactggatgtccattcttaagtcttccacctt 87  Q
    |||||||||||||||||| ||||||| ||| |||||||||| ||||||    
T  33190509 ttatgaaataatgacttagtggatgtacatccttaagtctttcacctt 33190462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 38 - 233
Target Start/End: Original strand, 39875721 - 39875906
Alignment:
Q  38 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaat 137  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||||||||  ||||||||||| |||| |||||||||||| | |||| ||||||         
T  39875721 tgttatgaaataatgacttagtggctgtccattctttagtcttccaccttcctataactcccattttctaccttcctataattctcatcagtaag----- 39875815  T
Q  138 agttagttgaccttaattgccttgatcactaacttattcatcttgtgtactataaatagggct--tattatattgcaaagatatacttgtgaaaagaa 233  Q
           ||||||||||||||||||||||| ||||| |||||||||||||||||||||  |||  |||| ||||||||||| | ||||||||| ||||    
T  39875816 -------tgaccttaattgccttgatcactcacttactcatcttgtgtactataaataaagctcctattgtattgcaaagacacacttgtgaagagaa 39875906  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 16221559 - 16221656
Alignment:
Q  41 tatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtgaata 138  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| ||  ||||||| ||| |||||||||||||||||||  ||||||||||||||||    
T  16221559 tatgaaataatgacttagtggatgtccatccttaagtcttccactttcctataacttccattttccaccttcctataactcccattagtaagtgaata 16221656  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 39872827 - 39872924
Alignment:
Q  38 tgttatgaaataatgacttactggatgtccattcttaagtcttccaccttgttataactcccactttccaccttcctataactttcattagtaagtga 135  Q
    |||||||||||||||||||| ||||||||||||||| |  ||||||||||  |||||| |||| |||| |||||||||||||||||||||||||||||    
T  39872827 tgttatgaaataatgacttagtggatgtccattctttaaccttccaccttcctataacacccattttctaccttcctataactttcattagtaagtga 39872924  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 8832649 - 8832533
Alignment:
Q  155 tgccttgatcactaacttattcatcttgtgtactataaataggg--cttattatattgcaaagatatacttgtgaaaagaataataatactaagtgcttt 252  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||  | |||| ||||||||||| | | |  |||| ||   |||||||| ||||| |||    
T  8832649 tgccttgatcactcacttactcatcttgtgtactataaatagggttcatattgtattgcaaagacacagtcttgaagag---aataatacaaagtgattt 8832553  T
Q  253 catcttctctttcctcttct 272  Q
    |||| |||| ||||||||||    
T  8832552 catcctctccttcctcttct 8832533  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 34111107 - 34111056
Alignment:
Q  104 tccaccttcctataactttcattagtaagtgaatagttagttgaccttaatt 155  Q
    |||||||||||||||||  ||||||| |||||||||||||| ||||||||||    
T  34111107 tccaccttcctataactcgcattagtgagtgaatagttagtggaccttaatt 34111056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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