View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18042_high_12 (Length: 270)

Name: NF18042_high_12
Description: NF18042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18042_high_12
NF18042_high_12
[»] chr6 (19 HSPs)
chr6 (132-230)||(32447198-32447296)
chr6 (131-230)||(11179378-11179476)
chr6 (131-230)||(14895580-14895679)
chr6 (172-230)||(31450026-31450084)
chr6 (16-66)||(32447081-32447131)
chr6 (16-66)||(11179269-11179319)
chr6 (190-230)||(2737138-2737178)
chr6 (164-230)||(4096286-4096352)
chr6 (164-230)||(4440520-4440586)
chr6 (194-236)||(12597259-12597301)
chr6 (194-230)||(162669-162705)
chr6 (194-230)||(2266969-2267005)
chr6 (194-230)||(3593086-3593122)
chr6 (194-230)||(6300709-6300745)
chr6 (194-230)||(6307519-6307555)
chr6 (194-230)||(8539746-8539782)
chr6 (194-230)||(14986391-14986427)
chr6 (194-230)||(28099597-28099633)
chr6 (194-230)||(33646135-33646171)
[»] chr5 (14 HSPs)
chr5 (131-230)||(9259129-9259228)
chr5 (16-66)||(9259294-9259344)
chr5 (195-230)||(34457597-34457632)
chr5 (194-236)||(20655043-20655085)
chr5 (165-230)||(37713652-37713717)
chr5 (194-230)||(2398942-2398978)
chr5 (194-230)||(10729442-10729478)
chr5 (194-230)||(16526306-16526342)
chr5 (194-230)||(17373161-17373197)
chr5 (194-230)||(20874881-20874917)
chr5 (194-230)||(34107338-34107374)
chr5 (194-230)||(34110845-34110881)
chr5 (194-230)||(38246865-38246901)
chr5 (194-230)||(40177234-40177270)
[»] chr4 (16 HSPs)
chr4 (131-230)||(23893181-23893280)
chr4 (153-230)||(28024097-28024174)
chr4 (184-230)||(8371080-8371126)
chr4 (184-230)||(43041589-43041635)
chr4 (195-230)||(23143187-23143222)
chr4 (195-230)||(34708175-34708210)
chr4 (194-230)||(22289955-22289991)
chr4 (194-232)||(37590802-37590840)
chr4 (194-230)||(12090459-12090495)
chr4 (194-230)||(16904952-16904988)
chr4 (194-230)||(18209704-18209740)
chr4 (194-230)||(30824922-30824958)
chr4 (194-230)||(31965969-31966005)
chr4 (194-230)||(33139471-33139507)
chr4 (194-230)||(37651859-37651895)
chr4 (194-230)||(52434817-52434853)
[»] chr7 (14 HSPs)
chr7 (167-230)||(11674312-11674375)
chr7 (166-230)||(11001324-11001389)
chr7 (195-230)||(15494152-15494187)
chr7 (172-230)||(13950987-13951045)
chr7 (194-230)||(13786363-13786399)
chr7 (194-230)||(16376545-16376581)
chr7 (194-230)||(21342016-21342052)
chr7 (194-230)||(21804572-21804608)
chr7 (194-230)||(27903417-27903453)
chr7 (194-230)||(31373649-31373685)
chr7 (194-230)||(33916947-33916983)
chr7 (194-230)||(38163339-38163375)
chr7 (194-230)||(40969084-40969120)
chr7 (194-230)||(42242154-42242190)
[»] chr8 (13 HSPs)
chr8 (153-230)||(43721777-43721854)
chr8 (184-230)||(5769490-5769536)
chr8 (184-230)||(24471862-24471908)
chr8 (191-230)||(11071961-11072000)
chr8 (195-230)||(31379392-31379427)
chr8 (194-230)||(995815-995851)
chr8 (194-230)||(6299020-6299056)
chr8 (194-230)||(10478130-10478166)
chr8 (194-230)||(15961325-15961361)
chr8 (194-230)||(18175574-18175610)
chr8 (194-230)||(23353622-23353658)
chr8 (194-230)||(30473884-30473920)
chr8 (194-230)||(32110861-32110897)
[»] chr3 (23 HSPs)
chr3 (131-226)||(53006658-53006754)
chr3 (184-236)||(25437276-25437328)
chr3 (184-230)||(37252313-37252359)
chr3 (194-236)||(54073223-54073265)
chr3 (166-230)||(5569089-5569153)
chr3 (164-232)||(46590274-46590342)
chr3 (194-233)||(4584431-4584470)
chr3 (194-232)||(1941718-1941756)
chr3 (180-230)||(30761267-30761317)
chr3 (191-228)||(50824064-50824101)
chr3 (191-228)||(50851759-50851796)
chr3 (194-230)||(3898615-3898651)
chr3 (194-230)||(6460168-6460204)
chr3 (194-230)||(12264393-12264429)
chr3 (194-230)||(20370358-20370394)
chr3 (194-230)||(21098497-21098533)
chr3 (194-230)||(26948991-26949027)
chr3 (194-230)||(34121548-34121584)
chr3 (194-230)||(36076454-36076490)
chr3 (194-230)||(38653927-38653963)
chr3 (194-230)||(40014653-40014689)
chr3 (194-230)||(43363611-43363647)
chr3 (194-230)||(49672755-49672791)
[»] scaffold0405 (1 HSPs)
scaffold0405 (170-230)||(11808-11868)
[»] chr1 (14 HSPs)
chr1 (188-230)||(4325454-4325496)
chr1 (166-230)||(26497621-26497685)
chr1 (195-230)||(41871384-41871419)
chr1 (172-230)||(43858536-43858594)
chr1 (194-232)||(31018198-31018236)
chr1 (195-232)||(47742344-47742381)
chr1 (194-230)||(1231989-1232025)
chr1 (194-230)||(2951366-2951402)
chr1 (194-230)||(4266574-4266610)
chr1 (194-230)||(9216224-9216260)
chr1 (194-230)||(18855233-18855269)
chr1 (194-230)||(29942211-29942247)
chr1 (194-230)||(34888686-34888722)
chr1 (194-230)||(38913747-38913783)
[»] scaffold1234 (1 HSPs)
scaffold1234 (191-236)||(1044-1089)
[»] scaffold0323 (1 HSPs)
scaffold0323 (172-230)||(11770-11828)
[»] chr2 (10 HSPs)
chr2 (164-230)||(17839219-17839285)
chr2 (184-230)||(24125399-24125445)
chr2 (194-230)||(6120745-6120781)
chr2 (194-230)||(8700454-8700490)
chr2 (194-230)||(18351744-18351780)
chr2 (194-230)||(19596363-19596399)
chr2 (194-230)||(20545018-20545054)
chr2 (194-230)||(27944796-27944832)
chr2 (194-230)||(41664703-41664739)
chr2 (194-230)||(44902274-44902310)
[»] scaffold0031 (1 HSPs)
scaffold0031 (194-230)||(46467-46503)
[»] scaffold0022 (1 HSPs)
scaffold0022 (194-230)||(149050-149086)


Alignment Details
Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 32447198 - 32447296
Alignment:
Q  132 acattgtatttgctcaaacacattattagttacaatataattgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  32447198 acattgtatttgctcaaacagattattagttacaatataattgaatgttttgtttgccatcaatatgacccgtgcgacaacacgggtgcaaggtctagt 32447296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 131 - 230
Target Start/End: Original strand, 11179378 - 11179476
Alignment:
Q  131 aacattgtatttgctcaaacacattattagttacaatataattgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||| |||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  11179378 aacattgtatttgcacaaacagattattagttacaatataattaaatgtttt-tttgccatcaatatgacccgtgcagcagcacgggtgcaaggtctagt 11179476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 131 - 230
Target Start/End: Original strand, 14895580 - 14895679
Alignment:
Q  131 aacattgtatttgctcaaacacattattagttacaatataattgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||| || ||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  14895580 aacattgtatttgcacagacagattcttagttacaatataattgaatgttttgtttgcaatcaatatgacccgtgcggcagcacggatgcaaggtctagt 14895679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 31450026 - 31450084
Alignment:
Q  172 ttgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||||||| ||||||||||||||| || |||||||||| |||||||| ||||||||||    
T  31450026 ttgaatgttatgtttgccatcaataggatccgtgcggcaacacgggtggaaggtctagt 31450084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 32447081 - 32447131
Alignment:
Q  16 catttacattgccgcacaggtgaaaagtctagattgaccacccgtgcctaa 66  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  32447081 catttacattgtcgcacgggtgaaaagtctggattgaccacccgtgcctaa 32447131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 11179269 - 11179319
Alignment:
Q  16 catttacattgccgcacaggtgaaaagtctagattgaccacccgtgcctaa 66  Q
    ||||||||||||||||| | |||||||||||||| |||||||| |||||||    
T  11179269 catttacattgccgcacggatgaaaagtctagatcgaccacccttgcctaa 11179319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 2737138 - 2737178
Alignment:
Q  190 atcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||||||| | ||||||||    
T  2737138 atcaatatgacccgtgcggcagcacgggtggatggtctagt 2737178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 4096286 - 4096352
Alignment:
Q  164 caatataattgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||||| ||| ||||||||||| | || ||||||||||| ||| ||||||||||| | ||||||||    
T  4096286 caatatatttgcatgttttgttttcaattaatatgacccgggcgacagcacgggtggatggtctagt 4096352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 4440520 - 4440586
Alignment:
Q  164 caatataattgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||||| ||| ||||||||||| | || ||||||||||| ||| ||||||||||| | ||||||||    
T  4440520 caatatatttgcatgttttgttttcaattaatatgacccgggcgacagcacgggtggatggtctagt 4440586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 12597301 - 12597259
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagtgttaat 236  Q
    |||||||||||||||||||||||||| || ||||||| |||||    
T  12597301 atatgacccgtgcggcagcacgggtggaaagtctagttttaat 12597259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 162705 - 162669
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  162705 atatgacccgtgcggcagcacgggtggaaagtctagt 162669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 2266969 - 2267005
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  2266969 atatgacccgtgcggcagcacgggtggaaagtctagt 2267005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 3593086 - 3593122
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  3593086 atatgacccgtgcggcagcacgggtggaaagtctagt 3593122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 6300745 - 6300709
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||||||||||||||||||||||||||  |||||||    
T  6300745 atatgacccgtgcggcagcacgggtgcatagtctagt 6300709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 6307555 - 6307519
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||||||||||||||||||||||||||  |||||||    
T  6307555 atatgacccgtgcggcagcacgggtgcatagtctagt 6307519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 8539746 - 8539782
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  8539746 atatgacccgtgcggcagcacgggtggaaagtctagt 8539782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 14986427 - 14986391
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  14986427 atatgacccgtgcagcagcacgggtgcaaagtctagt 14986391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 28099633 - 28099597
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  28099633 atatgacccgtgcggcagcacgggtggaaagtctagt 28099597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 33646135 - 33646171
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  33646135 atatgacccgtgcggcagcacgggtggaaagtctagt 33646171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 9259228 - 9259129
Alignment:
Q  131 aacattgtatttgctcaaacacattattagttacaatataattgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  9259228 aacattatatttgcacaaacagattattagttacaatataattgaatgttttgtttgccatcaatatgacccatgcggcagcacgggtgtaaggtctagt 9259129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 9259344 - 9259294
Alignment:
Q  16 catttacattgccgcacaggtgaaaagtctagattgaccacccgtgcctaa 66  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9259344 catttacattgccgcacgggtgaaaagtctagattgaccacccgtgcctaa 9259294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 34457597 - 34457632
Alignment:
Q  195 tatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||||||| |||||    
T  34457597 tatgacccgtgcggcagcacgggtgcaaggactagt 34457632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 20655085 - 20655043
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagtgttaat 236  Q
    |||||||||||||||||||||||||| || ||||||| |||||    
T  20655085 atatgacccgtgcggcagcacgggtggaaagtctagtattaat 20655043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 37713717 - 37713652
Alignment:
Q  165 aatataattgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||| ||| ||||||||||| | || ||||||||||| ||| ||||||||||| | ||||||||    
T  37713717 aatatatttgcatgttttgttttcaattaatatgacccgggcgacagcacgggtggatggtctagt 37713652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 2398978 - 2398942
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  2398978 atatgacccgtgcggcagcacgggtggaaagtctagt 2398942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 10729478 - 10729442
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  10729478 atatgacccgtgcggcagcacgggtggaaagtctagt 10729442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 16526342 - 16526306
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  16526342 atatgacccgtgcggcagcacgggtggaaagtctagt 16526306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 17373197 - 17373161
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  17373197 atatgacccgtgcggcagcacgggtggaaagtctagt 17373161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 20874881 - 20874917
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  20874881 atatgacccgtgcggcagcacgggtggaaagtctagt 20874917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 34107374 - 34107338
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  34107374 atatgacccgtgcggcagcacgggtggaaagtctagt 34107338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 34110845 - 34110881
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  34110845 atatgacccgtgcggcagcacgggtggaaagtctagt 34110881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 38246901 - 38246865
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  38246901 atatgacccgtgcggcagcacgggtggaaagtctagt 38246865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 40177234 - 40177270
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  40177234 atatgacccgtgcggcagcacgggtggaaagtctagt 40177270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 131 - 230
Target Start/End: Original strand, 23893181 - 23893280
Alignment:
Q  131 aacattgtatttgctcaaacacattattagttacaatataattgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||| || ||| ||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  23893181 aacattgtatttgcacatacagattcttagttacaatataattgaatattttgtttgcaatcaatatgacccgtgcggccgcacgggtgcaaggtctagt 23893280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 28024097 - 28024174
Alignment:
Q  153 attattagttacaatataattgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  28024097 attattatttacaatataattgaatgttttgttttccatcaacatgacccgtgcggcagcacgggtgcaaggtctagt 28024174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 8371126 - 8371080
Alignment:
Q  184 tttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  8371126 tttgccgtcaatatgacccgtgcggcagcacgggtgcaaggtctagt 8371080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 43041635 - 43041589
Alignment:
Q  184 tttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||    
T  43041635 tttgccgtcaatatgacccgtgcggcagcacgggtgcgaggtctagt 43041589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 23143222 - 23143187
Alignment:
Q  195 tatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||||||||||||||||||||||||||||||||||    
T  23143222 tatgacccgtgcggcagcacgggtgcaaggtctagt 23143187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 34708175 - 34708210
Alignment:
Q  195 tatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||||||||||||||||||||||||||||||||||    
T  34708175 tatgacccgtgcggcagcacgggtgcaaggtctagt 34708210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 22289991 - 22289955
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||||| |||||||||||||||||||||||||||||    
T  22289991 atatgactcgtgcggcagcacgggtgcaaggtctagt 22289955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 37590840 - 37590802
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagtgt 232  Q
    |||||||||||||||||||||||||| || |||||||||    
T  37590840 atatgacccgtgcggcagcacgggtggaaagtctagtgt 37590802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 12090495 - 12090459
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  12090495 atatgacccgtgcggcagcacgggtggaaagtctagt 12090459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 16904988 - 16904952
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  16904988 atatgacccgtgcggcagcacgggtggaaagtctagt 16904952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 18209704 - 18209740
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  18209704 atatgacccgtgcggcagcacgggtggaaagtctagt 18209740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 30824958 - 30824922
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  30824958 atatgacccgtgcggcagcacgggtggaaagtctagt 30824922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 31966005 - 31965969
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  31966005 atatgacccgtgcggcagcacgggtggaaagtctagt 31965969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 33139507 - 33139471
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  33139507 atatgacccgtgcggcagcacgggtggaaagtctagt 33139471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 37651859 - 37651895
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  37651859 atatgacccgtgcggcagcacgggtggaaagtctagt 37651895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 52434817 - 52434853
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  52434817 atatgacccgtgcggcagcacgggtggaaagtctagt 52434853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 11674312 - 11674375
Alignment:
Q  167 tataattgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11674312 tataattgaatgttttgtttgccatcaatatgacccgtgcggcagcacaggtgcaaggtctagt 11674375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 11001389 - 11001324
Alignment:
Q  166 atataattgaatgttttgtttgcca-tcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||| ||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||||||    
T  11001389 atatatttgaatgttttattttccaatcaatatgacccgtgcggcagcacgggtggaaggtctagt 11001324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 15494187 - 15494152
Alignment:
Q  195 tatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||||||||||||||||||||||||||||||||||    
T  15494187 tatgacccgtgcggcagcacgggtgcaaggtctagt 15494152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 13950987 - 13951045
Alignment:
Q  172 ttgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||||||||||||| | ||| | |||||||||||| ||||||||||| | ||||||||    
T  13950987 ttgaatgttttgttttcaatcgagatgacccgtgcgacagcacgggtggatggtctagt 13951045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 13786363 - 13786399
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  13786363 atatgacccgtgcggcagcacgggtggaaagtctagt 13786399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 16376581 - 16376545
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  16376581 atatgacccgtgcggcagcacgggtggaaagtctagt 16376545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 21342016 - 21342052
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  21342016 atatgacccgtgcggcagcacgggtggaaagtctagt 21342052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 21804608 - 21804572
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  21804608 atatgacccgtgcggcagcacgggtggaaagtctagt 21804572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 27903453 - 27903417
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  27903453 atatgacccgtgcggcagcacgggtggaaagtctagt 27903417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 31373649 - 31373685
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  31373649 atatgacccgtgcggcagcacgggtggaaagtctagt 31373685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 33916983 - 33916947
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  33916983 atatgacccgtgcggcagcacgggtggaaagtctagt 33916947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 38163375 - 38163339
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  38163375 atatgacccgtgcggcagcacgggtggaaagtctagt 38163339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 40969084 - 40969120
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  40969084 atatgacccgtgcggcagcacgggtggaaagtctagt 40969120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 42242190 - 42242154
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  42242190 atatgacccgtgcggcagcacgggtggaaagtctagt 42242154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 43721777 - 43721854
Alignment:
Q  153 attattagttacaatataattgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||||| ||| || ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  43721777 attattatttaaaacataattgaatgttttgttttccatcaatatgacccgtgcggcagcacggatgcaaggtctagt 43721854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 5769536 - 5769490
Alignment:
Q  184 tttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  5769536 tttgccgtcaatatgacccgtgcggcagcacgggtgcaaggtctagt 5769490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 24471862 - 24471908
Alignment:
Q  184 tttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  24471862 tttgccgtcaatatgacccgtgcggcagcacgggtgcaaggtctagt 24471908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 11072000 - 11071961
Alignment:
Q  191 tcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11072000 tcaatatgacccgtgcggcagcacgggtgcaaggtctagt 11071961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 31379392 - 31379427
Alignment:
Q  195 tatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||||||||||||||||||||||||||||||||||    
T  31379392 tatgacccgtgcggcagcacgggtgcaaggtctagt 31379427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 995851 - 995815
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  995851 atatgacccgtgcggcagcacgggtggaaagtctagt 995815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 6299056 - 6299020
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  6299056 atatgacccgtgcggcagcacgggtggaaagtctagt 6299020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 10478130 - 10478166
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  10478130 atatgacccgtgcggcagcacgggtggaaagtctagt 10478166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 15961325 - 15961361
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  15961325 atatgacccgtgcggcagcacgggtggaaagtctagt 15961361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 18175574 - 18175610
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  18175574 atatgacccgtgcggcagcacgggtggaaagtctagt 18175610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 23353658 - 23353622
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  23353658 atatgacccgtgcggcagcacgggtggaaagtctagt 23353622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 30473920 - 30473884
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  30473920 atatgacccgtgcggcagcacgggtggaaagtctagt 30473884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 32110897 - 32110861
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  32110897 atatgacccgtgcggcagcacgggtggaaagtctagt 32110861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 53006658 - 53006754
Alignment:
Q  131 aacattgtatttgctcaaacacattattagtta-caatataattgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtc 226  Q
    |||||||||||||| |||||| ||||| | ||| || ||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  53006658 aacattgtatttgcacaaacagattatgaattaacagtataattgaatgttttgttttacatcaatatgatccgtgcggcagcacgggtgcaaggtc 53006754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 25437276 - 25437328
Alignment:
Q  184 tttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagtgttaat 236  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  25437276 tttgccgtcaatatgacccgtgcggcagcacgggtgcaaggtctagtattaat 25437328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 37252359 - 37252313
Alignment:
Q  184 tttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||    
T  37252359 tttgccgtcaatatgacccgtgcagcagcacgggtgcaaggtctagt 37252313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 54073223 - 54073265
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagtgttaat 236  Q
    |||||||||||||||||||||||||| || |||||||||||||    
T  54073223 atatgacccgtgcggcagcacgggtggaaagtctagtgttaat 54073265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 5569153 - 5569089
Alignment:
Q  166 atataattgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||| ||||||||| ||||| | || |||||||||||||||||| |||  ||||||||||||||    
T  5569153 atatatttgaatgttctgtttccaataaatatgacccgtgcggcaacacaagtgcaaggtctagt 5569089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 46590342 - 46590274
Alignment:
Q  164 caatataattgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagtgt 232  Q
    ||||||| ||| ||||||||||| | || ||||||||||| ||| ||||||||||| | ||||||||||    
T  46590342 caatatatttgcatgttttgttttcaattaatatgacccgggcgacagcacgggtggatggtctagtgt 46590274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 4584470 - 4584431
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagtgtt 233  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  4584470 atatgacccgtgcggcagcacgggtggaaagtctagtgtt 4584431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 1941756 - 1941718
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagtgt 232  Q
    |||||||||||||||||||||||||| || |||||||||    
T  1941756 atatgacccgtgcggcagcacgggtggaaagtctagtgt 1941718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 30761317 - 30761267
Alignment:
Q  180 tttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||| |||||||||||||||||  |||||||||| | ||||||||    
T  30761317 tttgtttgccgtcaatatgacccgtgcgatagcacgggtggatggtctagt 30761267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 50824101 - 50824064
Alignment:
Q  191 tcaatatgacccgtgcggcagcacgggtgcaaggtcta 228  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  50824101 tcaatatgaaccgtgcggcagcacggatgcaaggtcta 50824064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 50851759 - 50851796
Alignment:
Q  191 tcaatatgacccgtgcggcagcacgggtgcaaggtcta 228  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  50851759 tcaatatgaaccgtgcggcagcacggatgcaaggtcta 50851796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 3898615 - 3898651
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  3898615 atatgacccgtgcggcagcacgggtggaaagtctagt 3898651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 6460204 - 6460168
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  6460204 atatgacccgtgcggcagcacgggtggaaagtctagt 6460168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 12264393 - 12264429
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  12264393 atatgacccgtgcggcagcacgggtggaaagtctagt 12264429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 20370394 - 20370358
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| | ||||||||    
T  20370394 atatgacccgtgcggcagcacgggtggatggtctagt 20370358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 21098497 - 21098533
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  21098497 atatgacccgtgcggcagcacgggtggaaagtctagt 21098533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 26948991 - 26949027
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  26948991 atatgacccgtgcggcagcacgggtggaaagtctagt 26949027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 34121548 - 34121584
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  34121548 atatgacccgtgcggcagcacgggtggaaagtctagt 34121584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 36076490 - 36076454
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  36076490 atatgacccgtgcggcagcacgggtggaaagtctagt 36076454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 38653963 - 38653927
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  38653963 atatgacccgtgcggcagcacgggtggaaagtctagt 38653927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 40014689 - 40014653
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  40014689 atatgacccgtgcggcagcacgggtggaaagtctagt 40014653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 43363647 - 43363611
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  43363647 atatgacccgtgcggcagcacgggtggaaagtctagt 43363611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 49672755 - 49672791
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  49672755 atatgacccgtgcggcagcacgggtggaaagtctagt 49672791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0405 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0405
Description:

Target: scaffold0405; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 11868 - 11808
Alignment:
Q  170 aattgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||  |||||||||    
T  11868 aattgaatgttttgtttgccgtcaatatgacccgtgcgacagcacgggtggcaggtctagt 11808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 4325496 - 4325454
Alignment:
Q  188 ccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4325496 ccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 4325454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 26497621 - 26497685
Alignment:
Q  166 atataattgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||| ||||||||| ||||| | || |||||||||||||||||||||||||||||| |||||||    
T  26497621 atatatttgaatgttctgtttccaataaatatgacccgtgcggcagcacgggtgcaaagtctagt 26497685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 41871384 - 41871419
Alignment:
Q  195 tatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||||||||||||||||||||||||||||||||||    
T  41871384 tatgacccgtgcggcagcacgggtgcaaggtctagt 41871419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 43858536 - 43858594
Alignment:
Q  172 ttgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||   || | ||||||||||||| ||||||||||||||||||||||    
T  43858536 ttgaatgttttgtttctaataattatgacccgtgcgacagcacgggtgcaaggtctagt 43858594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 31018236 - 31018198
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagtgt 232  Q
    |||||||||||||||||||||||||| || |||||||||    
T  31018236 atatgacccgtgcggcagcacgggtggaaagtctagtgt 31018198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 47742344 - 47742381
Alignment:
Q  195 tatgacccgtgcggcagcacgggtgcaaggtctagtgt 232  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  47742344 tatgacctgtgcggcagcacgggtgcaaggactagtgt 47742381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 1231989 - 1232025
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  1231989 atatgacccgtgcggcagcacgggtggaaagtctagt 1232025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 2951402 - 2951366
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  2951402 atatgacccgtgcggcagcacgggtggaaagtctagt 2951366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 4266574 - 4266610
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  4266574 atatgacccgtgcggcagcacgggtggaaagtctagt 4266610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 9216224 - 9216260
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  9216224 atatgacccgtgcggcagcacgggtggaaagtctagt 9216260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 18855269 - 18855233
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  18855269 atatgacccgtgcggcagcacgggtggaaagtctagt 18855233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 29942211 - 29942247
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  29942211 atatgacccgtgcggcagcacgggtggaaagtctagt 29942247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 34888722 - 34888686
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  34888722 atatgacccgtgcggcagcacgggtggaaagtctagt 34888686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 38913783 - 38913747
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  38913783 atatgacccgtgcggcagcacgggtggaaagtctagt 38913747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1234 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1234
Description:

Target: scaffold1234; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 1044 - 1089
Alignment:
Q  191 tcaatatgacccgtgcggcagcacgggtgcaaggtctagtgttaat 236  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  1044 tcaatatgacccgtgcggcagcacgggtgcaaggtctagttttaat 1089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 11770 - 11828
Alignment:
Q  172 ttgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||| |||||||||||| |||||||||| |||||||||||||||||| | ||||||||    
T  11770 ttgaaagttttgtttgccgtcaatatgacacgtgcggcagcacgggtggatggtctagt 11828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 17839219 - 17839285
Alignment:
Q  164 caatataattgaatgttttgtttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    ||||||| ||| ||||||||||| | ||| |||||||||||||||||||||||||| | ||||||||    
T  17839219 caatatatttgcatgttttgtttccaatcgatatgacccgtgcggcagcacgggtggatggtctagt 17839285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 24125399 - 24125445
Alignment:
Q  184 tttgccatcaatatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||| || ||||||| |||||||||||||||||||||||||||||    
T  24125399 tttgccgtcgatatgacacgtgcggcagcacgggtgcaaggtctagt 24125445  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 6120745 - 6120781
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  6120745 atatgacccgtgcggcagcacgggtggaaagtctagt 6120781  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 8700454 - 8700490
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  8700454 atatgacccgtgcggcagcacgggtggaaagtctagt 8700490  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 18351744 - 18351780
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  18351744 atatgacccgtgcggcagcacgggtggaaagtctagt 18351780  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 19596399 - 19596363
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  19596399 atatgacccgtgcggcagcacgggtggaaagtctagt 19596363  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 20545018 - 20545054
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  20545018 atatgacccgtgcggcagcacgggtggaaagtctagt 20545054  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 27944832 - 27944796
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  27944832 atatgacccgtgcggcagcacgggtggaaagtctagt 27944796  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 41664703 - 41664739
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  41664703 atatgacccgtgcggcagcacgggtggaaagtctagt 41664739  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 44902274 - 44902310
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  44902274 atatgacccgtgcggcagcacgggtggaaagtctagt 44902310  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 46467 - 46503
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  46467 atatgacccgtgcggcagcacgggtggaaagtctagt 46503  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 149086 - 149050
Alignment:
Q  194 atatgacccgtgcggcagcacgggtgcaaggtctagt 230  Q
    |||||||||||||||||||||||||| || |||||||    
T  149086 atatgacccgtgcggcagcacgggtggaaagtctagt 149050  T

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